RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 ATP6V1AP38606 617 aa8.15□□□□□ -1.1
SMC1A-201ENST00000322213 TROQ12816 1431 aaPredicted RBP8.15□□□□□ -1.1
SMC1A-201ENST00000322213 TOPBP1Q92547 1522 aa8.15□□□□□ -1.1
SMC1A-201ENST00000322213 CWC27Q6UX04 472 aaKnown RBP8.15□□□□□ -1.1
SMC1A-201ENST00000322213 TYRO3Q06418 890 aa8.15□□□□□ -1.1
SMC1A-201ENST00000322213 STK3Q13188 491 aa8.15□□□□□ -1.1
SMC1A-201ENST00000322213 RAB11FIP3O75154 756 aa8.15□□□□□ -1.1
SMC1A-201ENST00000322213 CCDC12Q8WUD4 166 aaPredicted RBP8.15□□□□□ -1.1
SMC1A-201ENST00000322213 INTS4Q96HW7 963 aaKnown RBP8.15□□□□□ -1.1
SMC1A-201ENST00000322213 NAA15Q9BXJ9 866 aaKnown RBP8.15□□□□□ -1.1
SMC1A-201ENST00000322213 KIF3BO15066 747 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 HMOX1P09601 288 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 SPA17Q15506 151 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 GCOM1H8Y6P7 765 aaPredicted RBP8.15□□□□□ -1.11
SMC1A-201ENST00000322213 IGSF3O75054 1194 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 CCDC172P0C7W6 258 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 MYZAPP0CAP1 466 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 CEP131Q9UPN4 1083 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 EIF4G3O43432 1585 aaKnown RBP8.15□□□□□ -1.11
SMC1A-201ENST00000322213 TCOF1Q13428 1488 aaKnown RBP8.15□□□□□ -1.11
SMC1A-201ENST00000322213 OPA1O60313 960 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 GIMAP6Q6P9H5 292 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 CEP120Q8N960 986 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 BCL2L12Q9HB09 334 aa8.15□□□□□ -1.11
SMC1A-201ENST00000322213 ZSCAN16Q9H4T2 348 aaPredicted RBP8.14□□□□□ -1.11
SMC1A-201ENST00000322213 FAM177BA6PVY3 158 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 OTUD6BQ8N6M0 293 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 NUP88Q99567 741 aaPredicted RBP8.14□□□□□ -1.11
SMC1A-201ENST00000322213 CNPY2Q9Y2B0 182 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 C1orf141Q5JVX7 400 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 TAX1BP1Q86VP1 789 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SPATA24Q86W54 205 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SSH1Q8WYL5 1049 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SNAPC4Q5SXM2 1469 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 CCDC121Q6ZUS5 278 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 FAM76AQ8TAV0 307 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 WDR62O43379 1518 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 AKAP12Q02952 1782 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 EIF5P55010 431 aaKnown RBP8.14□□□□□ -1.11
SMC1A-201ENST00000322213 GNG11P61952 73 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 CEP57Q86XR8 500 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.14□□□□□ -1.11
SMC1A-201ENST00000322213 PLPPR3Q6T4P5 718 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 TRIM22Q8IYM9 498 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SWAP70Q9UH65 585 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 PRAG1Q86YV5 1406 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SURF6O75683 361 aaKnown RBP8.14□□□□□ -1.11
SMC1A-201ENST00000322213 SCLT1Q96NL6 688 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 PRDM4Q9UKN5 801 aa8.14□□□□□ -1.11
SMC1A-201ENST00000322213 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.14□□□□□ -1.11
SMC1A-201ENST00000322213 GJB2P29033 226 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 IFFO1Q0D2I5 559 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 VPS53Q5VIR6 699 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 AMOTL1Q8IY63 956 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 YY1AP1Q9H869 796 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 FBXO3Q9UK99 471 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 PTPRCP08575 1304 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 FMNL3Q8IVF7 1028 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 DRC1Q96MC2 740 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 NSRP1Q9H0G5 558 aaKnown RBP8.13□□□□□ -1.11
SMC1A-201ENST00000322213 DISP3Q9P2K9 1392 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 TMCO5BA8MYB1 307 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 SYT1P21579 422 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 PTGS1P23219 599 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 IRX5P78411 483 aaPredicted RBP8.13□□□□□ -1.11
SMC1A-201ENST00000322213 RPAP2Q8IXW5 612 aaPredicted RBP8.13□□□□□ -1.11
SMC1A-201ENST00000322213 AFAP1L1Q8TED9 768 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 TMX4Q9H1E5 349 aaPredicted RBP8.13□□□□□ -1.11
SMC1A-201ENST00000322213 DUOX2Q9NRD8 1548 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 ZNF644Q9H582 1327 aaPredicted RBP8.13□□□□□ -1.11
SMC1A-201ENST00000322213 MYO5BQ9ULV0 1848 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 DNAJC21Q5F1R6 531 aaKnown RBP8.13□□□□□ -1.11
SMC1A-201ENST00000322213 GOLGA5Q8TBA6 731 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 ARHGAP25P42331 645 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 GDPD2Q9HCC8 539 aa8.13□□□□□ -1.11
SMC1A-201ENST00000322213 NAA25Q14CX7 972 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 LMOD2Q6P5Q4 547 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 WDR66Q8TBY9 1149 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 KIAA1210Q9ULL0 1709 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 IL16Q14005 1332 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 ZSCAN26Q16670 478 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 WASF1Q92558 559 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 RBSNQ9H1K0 784 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 TMPOP42166 694 aaKnown RBP8.12□□□□□ -1.11
SMC1A-201ENST00000322213 ELF2Q15723 593 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 ICE2Q659A1 982 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 ANKRD26Q9UPS8 1709 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 PRKAR2BP31323 418 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 TMX3Q96JJ7 454 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 ZNF853P0CG23 659 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 TEFQ10587 303 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 SLC20A2Q08357 652 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 SMC1AQ14683 1233 aaKnown RBP8.12□□□□□ -1.11
SMC1A-201ENST00000322213 SUDS3Q9H7L9 328 aaPredicted RBP8.12□□□□□ -1.11
SMC1A-201ENST00000322213 RAD50Q92878 1312 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 CTAGE1Q96RT6 745 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 DNAI1Q9UI46 699 aa8.12□□□□□ -1.11
SMC1A-201ENST00000322213 SLC3A2P08195 630 aaKnown RBP8.11□□□□□ -1.11
SMC1A-201ENST00000322213 NECTIN2Q92692 538 aa8.11□□□□□ -1.11
SMC1A-201ENST00000322213 SHANK2Q9UPX8 1470 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms