RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 VEGFBP49765 207 aa6.64□□□□□ -1.35
CD44-202ENST00000278385 CCDC27Q2M243 656 aa6.64□□□□□ -1.35
CD44-202ENST00000278385 FAM9AQ8IZU1 332 aaPredicted RBP6.64□□□□□ -1.35
CD44-202ENST00000278385 PHF24Q9UPV7 400 aa6.64□□□□□ -1.35
CD44-202ENST00000278385 NOS2P35228 1153 aa6.63□□□□□ -1.35
CD44-202ENST00000278385 LBRQ14739 615 aaKnown RBP6.63□□□□□ -1.35
CD44-202ENST00000278385 HIF1AQ16665 826 aa6.63□□□□□ -1.35
CD44-202ENST00000278385 SWI5Q1ZZU3 235 aa6.63□□□□□ -1.35
CD44-202ENST00000278385 ATAD2Q6PL18 1390 aa6.63□□□□□ -1.35
CD44-202ENST00000278385 SCG3Q8WXD2 468 aaKnown RBP6.63□□□□□ -1.35
CD44-202ENST00000278385 L3MBTL2Q969R5 705 aa6.63□□□□□ -1.35
CD44-202ENST00000278385 CWC22Q9HCG8 908 aaKnown RBP6.63□□□□□ -1.35
CD44-202ENST00000278385 UNCXA6NJT0 531 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 H3BM21 787 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 TEAD4Q15561 434 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 FIGNL1Q6PIW4 674 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 TREML4Q6UXN2 200 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 TRIM22Q8IYM9 498 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 VWA5B2Q8N398 1253 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 NUCKS1Q9H1E3 243 aaKnown RBP6.62□□□□□ -1.35
CD44-202ENST00000278385 TSPAN10Q9H1Z9 355 aaPredicted RBP6.62□□□□□ -1.35
CD44-202ENST00000278385 ZDHHC3Q9NYG2 299 aa6.62□□□□□ -1.35
CD44-202ENST00000278385 NSFL1CQ9UNZ2 370 aaKnown RBP6.62□□□□□ -1.35
CD44-202ENST00000278385 IFT140Q96RY7 1462 aa6.61□□□□□ -1.35
CD44-202ENST00000278385 MSX1P28360 303 aa6.61□□□□□ -1.35
CD44-202ENST00000278385 TBCELQ5QJ74 424 aa6.61□□□□□ -1.35
CD44-202ENST00000278385 ANKIB1Q9P2G1 1089 aa6.61□□□□□ -1.35
CD44-202ENST00000278385 IGFBP4P22692 258 aa6.6□□□□□ -1.35
CD44-202ENST00000278385 GPC6Q9Y625 555 aaPredicted RBP6.6□□□□□ -1.35
CD44-202ENST00000278385 PARP3Q9Y6F1 533 aa6.6□□□□□ -1.35
CD44-202ENST00000278385 TOPBP1Q92547 1522 aa6.6□□□□□ -1.35
CD44-202ENST00000278385 SENP3-EIF4A1A0A087X0R7 540 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 FOXO3O43524 673 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 EPHA4P54764 986 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 FOXK2Q01167 660 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 B4GALNT3Q6L9W6 998 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 STAG2Q8N3U4 1231 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 RHPN1Q8TCX5 695 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 NANOS1Q8WY41 292 aaKnown RBP6.59□□□□□ -1.35
CD44-202ENST00000278385 NGLY1Q96IV0 654 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 RUBCNLQ9H714 662 aa6.59□□□□□ -1.35
CD44-202ENST00000278385 IQSEC3Q9UPP2 1182 aaPredicted RBP6.59□□□□□ -1.35
CD44-202ENST00000278385 TAF7LQ5H9L4 462 aa6.58□□□□□ -1.36
CD44-202ENST00000278385 C1orf53Q5VUE5 145 aa6.58□□□□□ -1.36
CD44-202ENST00000278385 SND1Q7KZF4 910 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-202ENST00000278385 NLRP8Q86W28 1048 aa6.58□□□□□ -1.36
CD44-202ENST00000278385 HCN4Q9Y3Q4 1203 aa6.58□□□□□ -1.36
CD44-202ENST00000278385 A0A1W2PNR3 127 aa6.57□□□□□ -1.36
CD44-202ENST00000278385 RBM47A0AV96 593 aaKnown RBP6.57□□□□□ -1.36
CD44-202ENST00000278385 PRMT3O60678 531 aa6.57□□□□□ -1.36
CD44-202ENST00000278385 DKK1O94907 266 aa6.57□□□□□ -1.36
CD44-202ENST00000278385 NFX1Q12986 1120 aaKnown RBP6.57□□□□□ -1.36
CD44-202ENST00000278385 STK32AQ8WU08 396 aa6.57□□□□□ -1.36
CD44-202ENST00000278385 GTPBP3Q969Y2 492 aaKnown RBP6.57□□□□□ -1.36
CD44-202ENST00000278385 CRISPLD1Q9H336 500 aa6.57□□□□□ -1.36
CD44-202ENST00000278385 PTCD1O75127 700 aaKnown RBP6.56□□□□□ -1.36
CD44-202ENST00000278385 LGR5O75473 907 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 HIRAP54198 1017 aaPredicted RBP6.56□□□□□ -1.36
CD44-202ENST00000278385 SRPK2P78362 688 aaKnown RBP6.56□□□□□ -1.36
CD44-202ENST00000278385 INSM1Q01101 510 aaPredicted RBP6.56□□□□□ -1.36
CD44-202ENST00000278385 DBN1Q16643 649 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 TMEM164Q5U3C3 297 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 CERS3Q8IU89 383 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 PRIMPOLQ96LW4 560 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 C2orf49Q9BVC5 232 aaPredicted RBP6.56□□□□□ -1.36
CD44-202ENST00000278385 PHACTR1Q9C0D0 580 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 USTQ9Y2C2 406 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 SOGA1O94964 1423 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 DNMBPQ6XZF7 1577 aa6.56□□□□□ -1.36
CD44-202ENST00000278385 ZNF608Q9ULD9 1512 aaPredicted RBP6.55□□□□□ -1.36
CD44-202ENST00000278385 EML1O00423 815 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 ATXN7O15265 892 aaPredicted RBP6.55□□□□□ -1.36
CD44-202ENST00000278385 VSIG8P0DPA2 414 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 ALDH16A1Q8IZ83 802 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 CLP1Q92989 425 aaKnown RBP6.55□□□□□ -1.36
CD44-202ENST00000278385 ZNF837Q96EG3 531 aaPredicted RBP6.55□□□□□ -1.36
CD44-202ENST00000278385 SPATA32Q96LK8 384 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 CFHR5Q9BXR6 569 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 ZMIZ1Q9ULJ6 1067 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 PCDHGC4Q9Y5F7 938 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 USP3Q9Y6I4 520 aa6.55□□□□□ -1.36
CD44-202ENST00000278385 POLA1P09884 1462 aaPredicted RBP6.54□□□□□ -1.36
CD44-202ENST00000278385 ARID4BQ4LE39 1312 aaPredicted RBP6.54□□□□□ -1.36
CD44-202ENST00000278385 MX2P20592 715 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 ATP2B4P23634 1241 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 WEE1P30291 646 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 TXLNAP40222 546 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 NEUROD1Q13562 356 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 RTN1Q16799 776 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 ZDHHC1Q8WTX9 485 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 ZIC5Q96T25 663 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 ATXN7L1Q9ULK2 861 aaPredicted RBP6.54□□□□□ -1.36
CD44-202ENST00000278385 IVNS1ABPQ9Y6Y0 642 aa6.54□□□□□ -1.36
CD44-202ENST00000278385 AQRO60306 1485 aaKnown RBP eCLIP6.53□□□□□ -1.36
CD44-202ENST00000278385 FAM181BA6NEQ2 426 aa6.53□□□□□ -1.36
CD44-202ENST00000278385 KHNYNO15037 678 aaKnown RBP6.53□□□□□ -1.36
CD44-202ENST00000278385 ATP4AP20648 1035 aa6.53□□□□□ -1.36
CD44-202ENST00000278385 GMPRP36959 345 aa6.53□□□□□ -1.36
CD44-202ENST00000278385 LRRC69Q6ZNQ3 347 aa6.53□□□□□ -1.36
CD44-202ENST00000278385 CEP63Q96MT8 703 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 171.2 ms