RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Ssh1Q76I79 1042 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ginm1Q91WR6 327 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Timm10P62073 90 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Tmc1Q8R4P5 757 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 4930407I10RikD3Z5T8 1512 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Dip2aQ8BWT5 1523 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 CemipQ8BI06 1361 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ppfia3P60469 1194 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Odf2lQ9D478 642 aa15.95■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Rbbp8nlA2ABX0 614 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 CoilQ5SU73 570 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Pm20d1Q8C165 503 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Rbm28Q8CGC6 750 aaKnown RBP15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 RestQ8VIG1 1082 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Polr3dQ91WD1 398 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ttc41Q692V3 1318 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Hoxa7P02830 229 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Nucb1Q02819 459 aaKnown RBP15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 AcrbpQ3V140 540 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Brinp3Q499E0 766 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Sik1Q60670 779 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Tpx2A2APB8 745 aaKnown RBP15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Gm12185Q5NCB2 835 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 AidaQ8C4Q6 305 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Cdhr2E9Q7P9 1308 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Abca8aQ8K442 1620 aa15.94■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Dnai2A2AC93 623 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ets1P27577 440 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 MarsQ68FL6 902 aaKnown RBP15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ppp1r37Q8BKR5 712 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Tmem67Q8BR76 992 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Cyp2d12Q8BVD2 504 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 MaddQ80U28 1577 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 SfswapQ3USH5 945 aaKnown RBP15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Kiaa0753Q6A000 959 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Dhx38Q80X98 1228 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Bsdc1Q80Y55 427 aa15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Rnf214Q8BFU3 668 aaKnown RBP15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ptcd1Q8C2E4 695 aaKnown RBP15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Lrrc59Q922Q8 307 aaKnown RBP15.93■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ppfia1B2RXQ2 1266 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 F2rP30558 430 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Fsd1Q7TPM6 496 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Terf2O35144 541 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Tpd52l1O54818 204 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Hand2Q61039 217 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Rab3gap1Q80UJ7 981 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Cfap69Q8BH53 942 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Dip2bQ3UH60 1574 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ercc3P49135 783 aa15.92■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Stk36Q69ZM6 1316 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Bend3Q6PAL0 825 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Cap2Q9CYT6 476 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Adamts7Q68SA9 1657 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Dctn1O08788 1281 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Tnni2P13412 182 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Adora1Q60612 326 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Fbxo3Q9DC63 480 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ehbp1l1Q99MS7 1716 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Prune1Q8BIW1 454 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Pms1Q8K119 917 aa15.91■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Catsper2A2ARP9 588 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Tgfb1i1Q62219 461 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Gimap8Q75N62 688 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Krt25Q8VCW2 446 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Cops6O88545 324 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Anxa1P10107 346 aaKnown RBP15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Cnnm3Q32NY4 713 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Gripap1Q8VD04 806 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Hdac6Q9Z2V5 1149 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Qser1A2BIE1 1698 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Rreb1Q3UH06 1700 aaKnown RBP15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 TbcaP48428 108 aaKnown RBP15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Plekho1Q9JIY0 408 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Syde2E9PUP1 1314 aa15.9■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Atp2b3Q0VF55 1220 aa15.89■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Vps54Q5SPW0 977 aa15.89■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Utp3Q9JI13 469 aaKnown RBP15.89■□□□□ 0.14
Clcn3-204ENSMUST00000110301 Ehmt1Q5DW34 1296 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Dcaf5Q80T85 946 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Tmem143Q8VD26 458 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Hnrnpul1Q8VDM6 859 aaKnown RBP15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Atg3Q9CPX6 314 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Cfap99A0A140LIX9 648 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Mdm2P23804 489 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Esco1Q69Z69 843 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Cers3Q1A3B0 383 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Fsd2Q8BZ52 692 aa15.89■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Slx4ipQ9D7Y9 413 aa15.88■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Kif4P33174 1231 aa15.88■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Tshz2Q68FE9 1030 aa15.88■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Riok1Q922Q2 567 aa15.88■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Col1a2Q01149 1372 aa15.88■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Hap1O35668 628 aa15.88■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Pard3Q99NH2 1333 aa15.87■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Tpm3-rs7D3Z2H9 248 aa15.87■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Gm21969J3QJZ1 289 aa15.87■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Glipr1l2Q9CQ35 332 aa15.87■□□□□ 0.13
Clcn3-204ENSMUST00000110301 Rbm27Q5SFM8 1060 aaKnown RBP15.87■□□□□ 0.13
Clcn3-204ENSMUST00000110301 AceP09470 1312 aa15.87■□□□□ 0.13
Retrieved 100 of 22,080 RNA–protein pairs in 47.9 ms