RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SLC6A15Q9H2J7 730 aa15.08■□□□□ 0
CLN3-208ENST00000561505 FETUBQ9UGM5 382 aa15.08■□□□□ 0
CLN3-208ENST00000561505 PHF11Q9UIL8 331 aa15.08■□□□□ 0
CLN3-208ENST00000561505 ASB4Q9Y574 426 aa15.08■□□□□ 0
CLN3-208ENST00000561505 PLPP1O14494 284 aa15.07■□□□□ 0
CLN3-208ENST00000561505 DVL2O14641 736 aa15.07■□□□□ 0
CLN3-208ENST00000561505 PIAS1O75925 651 aa15.07■□□□□ 0
CLN3-208ENST00000561505 GPR75O95800 540 aa15.07■□□□□ 0
CLN3-208ENST00000561505 STMN1P16949 149 aa15.07■□□□□ 0
CLN3-208ENST00000561505 SSR2P43308 183 aa15.07■□□□□ 0
CLN3-208ENST00000561505 SLC12A2P55011 1212 aa15.07■□□□□ 0
CLN3-208ENST00000561505 PPP2R2AP63151 447 aa15.07■□□□□ 0
CLN3-208ENST00000561505 KCNJ2P63252 427 aa15.07■□□□□ 0
CLN3-208ENST00000561505 TNFRSF17Q02223 184 aa15.07■□□□□ 0
CLN3-208ENST00000561505 DUSP8Q13202 625 aa15.07■□□□□ 0
CLN3-208ENST00000561505 SNTB1Q13884 538 aaKnown RBP15.07■□□□□ 0
CLN3-208ENST00000561505 CEBPEQ15744 281 aa15.07■□□□□ 0
CLN3-208ENST00000561505 PRAMEF20Q5VT98 475 aa15.07■□□□□ 0
CLN3-208ENST00000561505 NSUN5P2Q63ZY6 315 aa15.07■□□□□ 0
CLN3-208ENST00000561505 VASNQ6EMK4 673 aa15.07■□□□□ 0
CLN3-208ENST00000561505 GRHL2Q6ISB3 625 aa15.07■□□□□ 0
CLN3-208ENST00000561505 PAMR1Q6UXH9 720 aa15.07■□□□□ 0
CLN3-208ENST00000561505 RGMAQ96B86 450 aa15.07■□□□□ 0
CLN3-208ENST00000561505 CPNE1Q99829 537 aa15.07■□□□□ 0
CLN3-208ENST00000561505 ANGPTL4Q9BY76 406 aa15.07■□□□□ 0
CLN3-208ENST00000561505 TRMT1Q9NXH9 659 aaKnown RBP15.07■□□□□ 0
CLN3-208ENST00000561505 ALKBH4Q9NXW9 302 aa15.07■□□□□ 0
CLN3-208ENST00000561505 CD274Q9NZQ7 290 aa15.07■□□□□ 0
CLN3-208ENST00000561505 MBD3L4A6NDZ8 208 aaPredicted RBP15.06■□□□□ 0
CLN3-208ENST00000561505 MBD3L3A6NE82 208 aaPredicted RBP15.06■□□□□ 0
CLN3-208ENST00000561505 MBD3L5A6NJ08 208 aaPredicted RBP15.06■□□□□ 0
CLN3-208ENST00000561505 CD8B2A6NJW9 211 aa15.06■□□□□ 0
CLN3-208ENST00000561505 FAM159BA6NKW6 160 aa15.06■□□□□ 0
CLN3-208ENST00000561505 KDM4EB2RXH2 506 aaPredicted RBP15.06■□□□□ 0
CLN3-208ENST00000561505 K7EPI3 171 aa15.06■□□□□ 0
CLN3-208ENST00000561505 DYRK3O43781 588 aa15.06■□□□□ 0
CLN3-208ENST00000561505 CCNT2O60583 730 aaKnown RBP15.06■□□□□ 0
CLN3-208ENST00000561505 IL18BPO95998 194 aa15.06■□□□□ 0
CLN3-208ENST00000561505 EPXP11678 715 aa15.06■□□□□ 0
CLN3-208ENST00000561505 MTHFD2P13995 350 aa15.06■□□□□ 0
CLN3-208ENST00000561505 CDK9P50750 372 aaKnown RBP15.06■□□□□ 0
CLN3-208ENST00000561505 ZNF136P52737 540 aa15.06■□□□□ 0
CLN3-208ENST00000561505 HNRNPH2P55795 449 aaKnown RBP15.06■□□□□ 0
CLN3-208ENST00000561505 RAB10P61026 200 aa15.06■□□□□ 0
CLN3-208ENST00000561505 SORDQ00796 357 aa15.06■□□□□ 0
CLN3-208ENST00000561505 C18orf63Q68DL7 685 aa15.06■□□□□ 0
CLN3-208ENST00000561505 HUS1BQ8NHY5 278 aa15.06■□□□□ 0
CLN3-208ENST00000561505 MBD3L2Q8NHZ7 208 aaPredicted RBP15.06■□□□□ 0
CLN3-208ENST00000561505 STAG3L4Q8TBR4 150 aa15.06■□□□□ 0
CLN3-208ENST00000561505 SORBS1Q9BX66 1292 aaKnown RBP15.06■□□□□ 0
CLN3-208ENST00000561505 OR51B5Q9H339 312 aa15.06■□□□□ 0
CLN3-208ENST00000561505 GSX1Q9H4S2 264 aaPredicted RBP15.06■□□□□ 0
CLN3-208ENST00000561505 EXO5Q9H790 373 aa15.06■□□□□ 0
CLN3-208ENST00000561505 DDX31Q9H8H2 851 aaKnown RBP15.06■□□□□ 0
CLN3-208ENST00000561505 PLEKHF2Q9H8W4 249 aa15.06■□□□□ 0
CLN3-208ENST00000561505 DMRT3Q9NQL9 472 aa15.06■□□□□ 0
CLN3-208ENST00000561505 NUDT4Q9NZJ9 180 aa15.06■□□□□ 0
CLN3-208ENST00000561505 PLEKHA6Q9Y2H5 1048 aa15.06■□□□□ 0
CLN3-208ENST00000561505 NSD1Q96L73 2696 aaPredicted RBP15.05■□□□□ 0
CLN3-208ENST00000561505 DNHD1Q96M86 4753 aa15.05■□□□□ 0
CLN3-208ENST00000561505 VPS13CQ709C8 3753 aa15.05■□□□□ -0
CLN3-208ENST00000561505 A0A0A6YYD5 115 aa15.05■□□□□ -0
CLN3-208ENST00000561505 IQANK1A0A1B0GTG1 560 aa15.05■□□□□ -0
CLN3-208ENST00000561505 CCDC189A1A4V9 331 aa15.05■□□□□ -0
CLN3-208ENST00000561505 CCDC188H7C350 402 aa15.05■□□□□ -0
CLN3-208ENST00000561505 EIF3HO15372 352 aaKnown RBP eCLIP15.05■□□□□ -0
CLN3-208ENST00000561505 SNX4O95219 450 aa15.05■□□□□ -0
CLN3-208ENST00000561505 ATE1O95260 518 aa15.05■□□□□ -0
CLN3-208ENST00000561505 SLC35E2BP0CK96 405 aa15.05■□□□□ -0
CLN3-208ENST00000561505 SLC35E2P0CK97 266 aa15.05■□□□□ -0
CLN3-208ENST00000561505 BMP5P22003 454 aa15.05■□□□□ -0
CLN3-208ENST00000561505 SSTR1P30872 391 aa15.05■□□□□ -0
CLN3-208ENST00000561505 HOXC12P31275 282 aa15.05■□□□□ -0
CLN3-208ENST00000561505 TLX1P31314 330 aaPredicted RBP15.05■□□□□ -0
CLN3-208ENST00000561505 UQCRC1P31930 480 aa15.05■□□□□ -0
CLN3-208ENST00000561505 BSGP35613 385 aa15.05■□□□□ -0
CLN3-208ENST00000561505 GP5P40197 560 aa15.05■□□□□ -0
CLN3-208ENST00000561505 RPL21P46778 160 aaKnown RBP15.05■□□□□ -0
CLN3-208ENST00000561505 HERVK_113P63132 956 aa15.05■□□□□ -0
CLN3-208ENST00000561505 ERVK-8P63133 956 aa15.05■□□□□ -0
CLN3-208ENST00000561505 FUT7Q11130 342 aa15.05■□□□□ -0
CLN3-208ENST00000561505 DLG1Q12959 904 aa15.05■□□□□ -0
CLN3-208ENST00000561505 CUL3Q13618 768 aa15.05■□□□□ -0
CLN3-208ENST00000561505 SF3B4Q15427 424 aaKnown RBP eCLIP15.05■□□□□ -0
CLN3-208ENST00000561505 TMEM81Q6P7N7 255 aa15.05■□□□□ -0
CLN3-208ENST00000561505 RNF111Q6ZNA4 994 aa15.05■□□□□ -0
CLN3-208ENST00000561505 SLC29A4Q7RTT9 530 aa15.05■□□□□ -0
CLN3-208ENST00000561505 KLHL7Q8IXQ5 586 aa15.05■□□□□ -0
CLN3-208ENST00000561505 PM20D2Q8IYS1 436 aa15.05■□□□□ -0
CLN3-208ENST00000561505 ZBED8Q8IZ13 594 aa15.05■□□□□ -0
CLN3-208ENST00000561505 C17orf47Q8NEP4 570 aa15.05■□□□□ -0
CLN3-208ENST00000561505 GOT1L1Q8NHS2 421 aaPredicted RBP15.05■□□□□ -0
CLN3-208ENST00000561505 SPPL2AQ8TCT8 520 aa15.05■□□□□ -0
CLN3-208ENST00000561505 LRRC46Q96FV0 321 aa15.05■□□□□ -0
CLN3-208ENST00000561505 KRT12Q99456 494 aa15.05■□□□□ -0
CLN3-208ENST00000561505 DOHHQ9BU89 302 aa15.05■□□□□ -0
CLN3-208ENST00000561505 ERVK-6Q9BXR3 956 aa15.05■□□□□ -0
CLN3-208ENST00000561505 MTRF1LQ9UGC7 380 aaKnown RBP15.05■□□□□ -0
CLN3-208ENST00000561505 RNF112Q9ULX5 631 aa15.05■□□□□ -0
CLN3-208ENST00000561505 ERVK-19Q9WJR5 959 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms