RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 OR2T12Q8NG77 320 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 OR4K2Q8NGD2 314 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 OR52B6Q8NGF0 335 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 DYNC2LI1Q8TCX1 351 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 BLOC1S5Q8TDH9 187 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 FAR1Q8WVX9 515 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 S100ZQ8WXG8 99 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SOCS4Q8WXH5 440 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SGCDQ92629 289 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 FCGR1BQ92637 280 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 FBXO32Q969P5 355 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 TESCQ96BS2 214 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 TAMM41Q96BW9 452 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SDCCAG3Q96C92 435 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 LINGO1Q96FE5 620 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SLC47A1Q96FL8 570 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SH3YL1Q96HL8 342 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 AHCYL2Q96HN2 611 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 CDKN2AIPNLQ96HQ2 116 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 ABHD8Q96I13 439 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SPATA17Q96L03 361 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NSMCE3Q96MG7 304 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 PPM1MQ96MI6 270 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 RNF145Q96MT1 663 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 ZNF583Q96ND8 569 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 PSKH2Q96QS6 385 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NODALQ96S42 347 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SEPHS2Q99611 448 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SLX1AQ9BQ83 275 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 MTG1Q9BT17 334 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 HGH1Q9BTY7 390 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NTMT1Q9BV86 223 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 GABARAPL3Q9BY60 117 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 UGT2B28Q9BY64 529 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SLIRPQ9GZT3 109 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 PAIP1Q9H074 479 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.36□□□□□ -2.03
SPG11-223ENST00000560858 ING2Q9H160 280 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 MAGEH1Q9H213 219 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 DUSP21Q9H596 190 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 IKZF5Q9H5V7 419 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 CWH43Q9H720 699 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 ATP13A3Q9H7F0 1226 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 KAT8Q9H7Z6 458 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 ACTR8Q9H981 624 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SMURF2Q9HAU4 748 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 GPR35Q9HC97 309 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 CCNB1IP1Q9NPC3 277 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 DCAF13Q9NV06 445 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 ATAD3AQ9NVI7 634 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 FKBP14Q9NWM8 211 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 C14orf119Q9NWQ9 140 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 C1orf109Q9NX04 203 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 VNN3Q9NY84 501 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SLC25A37Q9NYZ2 338 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 CCDC59Q9P031 241 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 VAPAQ9P0L0 249 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 MTRRQ9UBK8 725 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 LHX3Q9UBR4 397 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 TRMT6Q9UJA5 497 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 UTS2RQ9UKP6 389 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NDRG4Q9ULP0 352 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 FAM50BQ9Y247 325 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 DHRS7Q9Y394 339 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 FAM32AQ9Y421 112 aaKnown RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 ZNF711Q9Y462 761 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 OARD1Q9Y530 152 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 TIMM22Q9Y584 194 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 A3GALT2U3KPV4 340 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NUP214P35658 2090 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 TET1Q8NFU7 2136 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 PTPRSQ13332 1948 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 PLXND1Q9Y4D7 1925 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NUP210LQ5VU65 1888 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 KCNE1BA0A087WTH5 132 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 LOC100130705A0A1B0GUX0 176 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ILVBLA1L0T0 632 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 OR2A25A4D2G3 310 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MTMR11A4FU01 709 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 HTR3EA5X5Y0 456 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 NCF1BA6NI72 391 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 METTL15A6NJ78 407 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SAGE2PA6NJ88 616 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 OR6C75A6NL08 312 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CLDN24A6NM45 220 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 C2orf81A6NN90 581 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 AGAP14A8MT82 685 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 NCF1CA8MVU1 366 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 F5H5T6 163 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 F8W810 466 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 G3V2T6 193 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 TAF4O00268 1085 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 SLC28A1O00337 649 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 MANBAO00462 879 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 CXCR6O00574 342 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 ENPP3O14638 875 aa2.35□□□□□ -2.03
SPG11-223ENST00000560858 PRMT5O14744 637 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 TNFRSF13BO14836 293 aaPredicted RBP2.35□□□□□ -2.03
SPG11-223ENST00000560858 AREL1O15033 823 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms