RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 RSPH10B2B2RC85 870 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 NPIPA3F8WFD2 350 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SLC33A1O00400 549 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CTDSPLO15194 276 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ANKRD17O75179 2603 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 KHDRBS3O75525 346 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SEC24AO95486 1093 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SLC25A27O95847 323 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MMP1P03956 469 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 VTNP04004 478 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 RSPH10BP0C881 870 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 UBTFL1P0CB47 393 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SP9P0CG40 484 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SLC2A2P11168 524 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CD59P13987 128 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CEBPBP17676 345 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ITIH1P19827 911 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PIK3R1P27986 724 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 FRKP42685 505 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 NOVA1P51513 510 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ST8SIA6P61647 398 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SNRPD1P62314 119 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 GSTO1P78417 241 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 FOLH1Q04609 750 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CSTF1Q05048 431 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SGCGQ13326 291 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ITGA9Q13797 1035 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 HNRNPDQ14103 355 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PDCD11Q14690 1871 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PTPN14Q15678 1187 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 KRT71Q3SY84 523 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 DDX59Q5T1V6 619 aaKnown RBP eCLIP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ADAM5Q6NVV9 412 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ARHGAP11AQ6P4F7 1023 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SLC25A47Q6Q0C1 308 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PRSS55Q6UWB4 352 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 GET4Q7L5D6 327 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CPEB2Q7Z5Q1 589 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 GPR141Q7Z602 305 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CCDC91Q7Z6B0 441 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PTAR1Q7Z6K3 402 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PIGWQ7Z7B1 504 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PRUNE1Q86TP1 453 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ANKRD46Q86W74 232 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 HOGA1Q86XE5 327 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MEX3DQ86XN8 651 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 LACC1Q8IV20 430 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CCDC170Q8IYT3 715 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 NUP93Q8N1F7 819 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PRSS35Q8N3Z0 413 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 FAM89BQ8N5H3 189 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 GBP7Q8N8V2 638 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 AMER3Q8N944 861 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 LRTM2Q8N967 370 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SUMF1Q8NBK3 374 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 OR7G3Q8NG95 312 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 OR5AP2Q8NGF4 316 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 OR4C15Q8NGM1 316 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MRGPRDQ8TDS7 321 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 GMPPAQ96IJ6 420 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 RBM41Q96IZ5 413 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MAGED4Q96JG8 741 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 LRR1Q96L50 414 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 C12orf42Q96LP6 360 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 NECTIN4Q96NY8 510 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 TSSK2Q96PF2 358 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 LITAFQ99732 161 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PIGQQ9BRB3 760 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ATG101Q9BSB4 218 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 FUCA2Q9BTY2 467 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 FUT8Q9BYC5 575 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 GFRA4Q9GZZ7 299 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 UPF3AQ9H1J1 476 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 P2RY12Q9H244 342 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 UBQLN3Q9H347 655 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MMADHCQ9H3L0 296 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 EGLN3Q9H6Z9 239 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF696Q9H7X3 374 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 C10orf88Q9H8K7 445 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 RAB9BQ9NP90 201 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MAN2C1Q9NTJ4 1040 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PDRG1Q9NUG6 133 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ABCB8Q9NUT2 735 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM161AQ9NX61 479 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 IL36AQ9UHA7 158 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 SLC12A6Q9UHW9 1150 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 FBXL5Q9UKA1 691 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 PRDM4Q9UKN5 801 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 ELF5Q9UKW6 265 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 CCPG1Q9ULG6 757 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 NDRG2Q9UN36 371 aaKnown RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 STX8Q9UNK0 236 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 WDR37Q9Y2I8 494 aa1.33□□□□□ -2.2
PRPF39-208ENST00000554785 MTF2Q9Y483 593 aaPredicted RBP1.33□□□□□ -2.2
PRPF39-208ENST00000554785 THADAQ6YHU6 1953 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 RAD50Q92878 1312 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 UBR5O95071 2799 aaPredicted RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 A0A087WUV0 522 aaPredicted RBP1.32□□□□□ -2.2
PRPF39-208ENST00000554785 TRBV4-1A0A0J9YWV2 114 aa1.32□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF195O14628 629 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms