RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 UBE2FQ969M7 185 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 FKBP14Q9NWM8 211 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 ENPP5Q9UJA9 477 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 ACAD8Q9UKU7 415 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 HCN4Q9Y3Q4 1203 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 WASHC1A8K0Z3 465 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 BTN3A3O00478 584 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 TNFSF14O43557 240 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 SEMA7AO75326 666 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 PRKRAO75569 313 aaKnown RBP13.02□□□□□ -0.33
RTN3-210ENST00000540798 AIFM1O95831 613 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 ACADMP11310 421 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 CCNA2P20248 432 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 MASP1P48740 699 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 EMP3P54852 163 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 SLC48A1Q6P1K1 146 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 VN1R4Q7Z5H5 301 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 OR52J3Q8NH60 311 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 JPH3Q8WXH2 748 aaPredicted RBP13.02□□□□□ -0.33
RTN3-210ENST00000540798 TANKQ92844 425 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 DNASE1L2Q92874 299 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 CNRIP1Q96F85 164 aaPredicted RBP13.02□□□□□ -0.33
RTN3-210ENST00000540798 SLC35G5Q96KT7 338 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 ZNF354BQ96LW1 612 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 BCL7BQ9BQE9 202 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 FUNDC2Q9BWH2 189 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 OR51I1Q9H343 314 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 P2RX2Q9UBL9 471 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 CCDC88CQ9P219 2028 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 PGRMC2O15173 223 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 PROM1O43490 865 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 GADD45GO95257 159 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 STATHP02808 62 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 F3P13726 295 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 NTSP30990 170 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 RGS19P49795 217 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 NCBP2P52298 156 aaKnown RBP eCLIP13.02□□□□□ -0.33
RTN3-210ENST00000540798 RPS15AP62244 130 aaKnown RBP13.02□□□□□ -0.33
RTN3-210ENST00000540798 YPEL5P62699 121 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 DUSP2Q05923 314 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 SYT6Q5T7P8 510 aaPredicted RBP13.02□□□□□ -0.33
RTN3-210ENST00000540798 GPR153Q6NV75 609 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 PRSS48Q7RTY5 328 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 OR4E2Q8NGC2 313 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 OR9Q2Q8NGE9 314 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 RHOXF1Q8NHV9 184 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 CCL4L1Q8NHW4 92 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 RASSF5Q8WWW0 418 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 TM4SF19Q96DZ7 209 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 RHNO1Q9BSD3 238 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 FUZQ9BT04 418 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 DCUN1D5Q9BTE7 237 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 BCL2L10Q9HD36 194 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 PSME2Q9UL46 239 aa13.02□□□□□ -0.33
RTN3-210ENST00000540798 OR2A25A4D2G3 310 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 CCNB2O95067 398 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 CERS1P27544 350 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 SLC19A1P41440 591 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 STXBP1P61764 594 aaKnown RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 MVKQ03426 396 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 TP53BP2Q13625 1128 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 EOGTQ5NDL2 527 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 Q6ZPB1 254 aaPredicted RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 RPLP0P6Q8NHW5 317 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 TSACCQ96A04 125 aaPredicted RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 MOAP1Q96BY2 351 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 TREX2Q9BQ50 279 aaPredicted RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 TMEM168Q9H0V1 697 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 FAM32AQ9Y421 112 aaKnown RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 DSPPQ9NZW4 1301 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 MYO9BQ13459 2157 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 ISM1B1AKI9 464 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 NOL3O60936 208 aaKnown RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 OR12D1P0DN82 309 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 HPCAP84074 193 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 KIR2DS3Q14952 304 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 COLEC12Q5KU26 742 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 GAL3ST3Q96A11 431 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 YIPF6Q96EC8 236 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 ZNF681Q96N22 645 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 ZNF607Q96SK3 696 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 TRNAU1APQ9NX07 287 aaKnown RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 LYARQ9NX58 379 aaKnown RBP13.01□□□□□ -0.33
RTN3-210ENST00000540798 KLHL20Q9Y2M5 609 aa13.01□□□□□ -0.33
RTN3-210ENST00000540798 F5P12259 2224 aa13□□□□□ -0.33
RTN3-210ENST00000540798 TOR1BO14657 336 aa13□□□□□ -0.33
RTN3-210ENST00000540798 AXIN1O15169 862 aa13□□□□□ -0.33
RTN3-210ENST00000540798 RGS10O43665 173 aa13□□□□□ -0.33
RTN3-210ENST00000540798 FAM20BO75063 409 aa13□□□□□ -0.33
RTN3-210ENST00000540798 MT-ND2P03891 347 aa13□□□□□ -0.33
RTN3-210ENST00000540798 SMIM10L1P0DMW3 83 aa13□□□□□ -0.33
RTN3-210ENST00000540798 GABRG2P18507 467 aa13□□□□□ -0.33
RTN3-210ENST00000540798 KHKP50053 298 aa13□□□□□ -0.33
RTN3-210ENST00000540798 FUT5Q11128 374 aa13□□□□□ -0.33
RTN3-210ENST00000540798 SYPL1Q16563 259 aa13□□□□□ -0.33
RTN3-210ENST00000540798 CTF1Q16619 201 aa13□□□□□ -0.33
RTN3-210ENST00000540798 ALG11Q2TAA5 492 aa13□□□□□ -0.33
RTN3-210ENST00000540798 C18orf63Q68DL7 685 aa13□□□□□ -0.33
RTN3-210ENST00000540798 TCTN3Q6NUS6 607 aa13□□□□□ -0.33
RTN3-210ENST00000540798 KIAA1324Q6UXG2 1013 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms