RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TEX13BQ9BXU2 312 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PRRG4Q9BZD6 226 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 API5Q9BZZ5 524 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NAT10Q9H0A0 1025 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ADNPQ9H2P0 1102 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CPVLQ9H3G5 476 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FZD8Q9H461 694 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GOLPH3LQ9H4A5 285 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TMEM206Q9H813 350 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NTN4Q9HB63 628 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FANCEQ9HB96 536 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PARVBQ9HBI1 364 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NEK6Q9HC98 313 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 VCX3AQ9NNX9 186 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PDE7BQ9NP56 450 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CHST11Q9NPF2 352 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MRPL40Q9NQ50 206 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SLC35C2Q9NQQ7 365 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FAM207AQ9NSI2 230 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 DDX18Q9NVP1 670 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 P4HTMQ9NXG6 502 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 WSB2Q9NYS7 404 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 IL20Q9NYY1 176 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 EMC3Q9P0I2 261 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 BAIAP2L1Q9UHR4 511 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 DAPK2Q9UIK4 370 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GGA2Q9UJY4 613 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CPSF3Q9UKF6 684 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 DDX19BQ9UMR2 479 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PPP1R3CQ9UQK1 317 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PADI2Q9Y2J8 665 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PYGO1Q9Y3Y4 419 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FAM32AQ9Y421 112 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FADS3Q9Y5Q0 445 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ZHX2Q9Y6X8 837 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 VPS13AQ96RL7 3174 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SCN9AQ15858 1988 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 OTOGLQ3ZCN5 2332 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 BRWD1Q9NSI6 2320 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FRMPD4Q14CM0 1322 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 UMODL1Q5DID0 1318 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ITPR1Q14643 2758 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ABCA2Q9BZC7 2435 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 hCG_1809904A0A1W2PP81 198 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 A0A1W2PPE2 198 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 A0A1W2PR64 198 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SYNDIG1LA6NDD5 238 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC69A6NI79 296 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SHISA7A6NL88 538 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OR5K4A6NMS3 321 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 KPNA7A9QM74 516 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RSPH10B2B2RC85 870 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 E9PMD0 336 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GOLGA8RI6L899 631 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 HIP1O00291 1037 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF195O14628 629 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CASQ2O14958 399 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CETN3O15182 167 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 KMOO15229 486 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 EIF3HO15372 352 aaKnown RBP eCLIP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 YKT6O15498 198 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ATP9AO75110 1047 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GMNNO75496 209 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GJB3O75712 270 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 FLOT1O75955 427 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PDE5AO76074 875 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SORBS2O94875 1100 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SNX4O95219 450 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 APBB3O95704 486 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CRYZL1O95825 349 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 WDPCPO95876 746 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TRUB2O95900 331 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 HLA-DRAP01903 254 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ATP5BP06576 529 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ZFYP08048 801 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RSPH10BP0C881 870 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 IGHV4-31P0DP07 118 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CYBAP13498 195 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CTRB1P17538 263 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 JAK1P23458 1154 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CFL1P23528 166 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 IL32P24001 234 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 EEF1B2P24534 225 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ADSSP30520 456 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 IFNA8P32881 189 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RPL9P32969 192 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RCVRNP35243 200 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PCK1P35558 622 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1E1P36543 226 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CD86P42081 329 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ATP5OP48047 213 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CCR3P51677 355 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ACLYP53396 1101 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PAX9P55771 341 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GSDMDP57764 484 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 POLR2GP62487 172 aaKnown RBP eCLIP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GSTO1P78417 241 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ELF3P78545 371 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 MRPS15P82914 257 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 HPCAP84074 193 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms