RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TAAR2Q9P1P5 351 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 HCFC2Q9Y5Z7 792 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 SLC5A10A0PJK1 596 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 MPZL2O60487 215 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 ICMTO60725 284 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 OSMP13725 252 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 ENPP1P22413 925 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 CBLP22681 906 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 BMPR1AP36894 532 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 RPL3P39023 403 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 MAP4K2Q12851 820 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 NCF4Q15080 339 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 GPAT3Q53EU6 434 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 ATAD3CQ5T2N8 411 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 KRT78Q8N1N4 520 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 IL17RDQ8NFM7 739 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 TMCO6Q96DC7 493 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 MTERF3Q96E29 417 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 TRMT61AQ96FX7 289 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 NECTIN4Q96NY8 510 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 TM9SF2Q99805 663 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 QRSL1Q9H0R6 528 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 MVB12BQ9H7P6 319 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 HHATLQ9HCP6 504 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 ZCCHC3Q9NUD5 404 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 ATP6V1HQ9UI12 483 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 A0A1W2PQL4 384 aaPredicted RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 SLC35F4A4IF30 521 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 FFAR1O14842 300 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PPM1DO15297 605 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PRKRAO75569 313 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 DDX5P17844 614 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 CSTF2P33240 577 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIG1-201ENST00000263274 CCT3P49368 545 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 PNLIPRP1P54315 467 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 KRT33BQ14525 404 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 SNAP47Q5SQN1 464 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 FAM71E1Q6IPT2 247 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 GALNT12Q8IXK2 581 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 SYT14Q8NB59 555 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 HHIPQ96QV1 700 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 BBS4Q96RK4 519 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 TMEM246Q9BRR3 403 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 RC3H2Q9HBD1 1191 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 SPHK2Q9NRA0 654 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 TDP1Q9NUW8 608 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 CUEDC1Q9NWM3 386 aaPredicted RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 RPL36Q9Y3U8 105 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 ZAR1LA6NP61 321 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PITPNM1O00562 1244 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 CASKO14936 926 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 LATO43561 262 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 SYN1P17600 705 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 UQCRC2P22695 453 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PRLHRP49683 370 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 SLC7A9P82251 487 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIG1-201ENST00000263274 SLAMF1Q13291 335 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 ZNF805Q5CZA5 627 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 CEP78Q5JTW2 689 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PLPP4Q5VZY2 271 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PARS2Q7L3T8 475 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 LAPTM4BQ86VI4 370 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIG1-201ENST00000263274 GFM1Q96RP9 751 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 ZNF607Q96SK3 696 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 TRMT61BQ9BVS5 477 aaKnown RBP12.01□□□□□ -0.49
LIG1-201ENST00000263274 PLSCR3Q9NRY6 295 aa12.01□□□□□ -0.49
LIG1-201ENST00000263274 PCM1Q15154 2024 aa12□□□□□ -0.49
LIG1-201ENST00000263274 NR2F6P10588 404 aa12□□□□□ -0.49
LIG1-201ENST00000263274 PCSK2P16519 638 aa12□□□□□ -0.49
LIG1-201ENST00000263274 GABRB1P18505 474 aa12□□□□□ -0.49
LIG1-201ENST00000263274 SDC2P34741 201 aa12□□□□□ -0.49
LIG1-201ENST00000263274 SCN1BQ07699 218 aa12□□□□□ -0.49
LIG1-201ENST00000263274 DBPQ10586 325 aaPredicted RBP12□□□□□ -0.49
LIG1-201ENST00000263274 IRF3Q14653 427 aa12□□□□□ -0.49
LIG1-201ENST00000263274 TCTN3Q6NUS6 607 aa12□□□□□ -0.49
LIG1-201ENST00000263274 ADIPOR2Q86V24 386 aa12□□□□□ -0.49
LIG1-201ENST00000263274 ELMOD2Q8IZ81 293 aa12□□□□□ -0.49
LIG1-201ENST00000263274 SLC7A13Q8TCU3 470 aa12□□□□□ -0.49
LIG1-201ENST00000263274 FCRL1Q96LA6 429 aa12□□□□□ -0.49
LIG1-201ENST00000263274 BARHL1Q9BZE3 327 aa12□□□□□ -0.49
LIG1-201ENST00000263274 CLCA3PQ9Y6N3 262 aa12□□□□□ -0.49
LIG1-201ENST00000263274 WASH3PC4AMC7 463 aa12□□□□□ -0.49
LIG1-201ENST00000263274 PI15O43692 258 aa12□□□□□ -0.49
LIG1-201ENST00000263274 IL7P13232 177 aa12□□□□□ -0.49
LIG1-201ENST00000263274 CXCR2P25025 360 aa12□□□□□ -0.49
LIG1-201ENST00000263274 HOXC5Q00444 222 aa12□□□□□ -0.49
LIG1-201ENST00000263274 FNDC3BQ53EP0 1204 aaKnown RBP12□□□□□ -0.49
LIG1-201ENST00000263274 C19orf18Q8NEA5 215 aa12□□□□□ -0.49
LIG1-201ENST00000263274 ANKK1Q8NFD2 765 aa12□□□□□ -0.49
LIG1-201ENST00000263274 TFGQ92734 400 aaPredicted RBP12□□□□□ -0.49
LIG1-201ENST00000263274 HHIPL1Q96JK4 782 aa12□□□□□ -0.49
LIG1-201ENST00000263274 MND1Q9BWT6 205 aa12□□□□□ -0.49
LIG1-201ENST00000263274 RNF208Q9H0X6 261 aa12□□□□□ -0.49
LIG1-201ENST00000263274 SLAMF7Q9NQ25 335 aa12□□□□□ -0.49
LIG1-201ENST00000263274 THSD1Q9NS62 852 aa12□□□□□ -0.49
LIG1-201ENST00000263274 TMEM39AQ9NV64 488 aa12□□□□□ -0.49
LIG1-201ENST00000263274 CMAHPQ9Y471 501 aa12□□□□□ -0.49
LIG1-201ENST00000263274 SH3D21A4FU49 640 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms