RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 HEPACAM2A8MVW5 462 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 ALOX5P09917 674 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 TCEA1P23193 301 aaKnown RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 HOXD12P35452 270 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 SSR2P43308 183 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 INSL4Q14641 139 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF362Q5T0B9 420 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-201ENST00000253024 C22orf42Q6IC83 251 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 ABI3BPQ7Z7G0 1075 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 CPA6Q8N4T0 437 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 OR8K5Q8NH50 307 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 COL26A1Q96A83 441 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 CNIH4Q9P003 139 aa20.2■□□□□ 0.82
TRIM28-201ENST00000253024 HTR3EA5X5Y0 456 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ZAR1LA6NP61 321 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 QSOX1O00391 747 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 IFNA14P01570 189 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 H1F0P07305 194 aaKnown RBP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 HBQ1P09105 142 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 UQCRC2P22695 453 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 SOX6P35712 828 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 CD79BP40259 229 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 RAB15P59190 212 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 PDE7AQ13946 482 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 CRB2Q5IJ48 1285 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 FAM46DQ8NEK8 389 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 RAD51AP1Q96B01 352 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 SLC6A18Q96N87 628 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 TRNT1Q96Q11 434 aaKnown RBP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 FERD3LQ96RJ6 166 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 TM9SF2Q99805 663 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 MMP28Q9H239 520 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 FZD3Q9NPG1 666 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ANKMY1Q9P2S6 941 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 IRAK3Q9Y616 596 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 SERTM1A2A2V5 107 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 PI15O43692 258 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 MFN2O95140 757 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF91Q05481 1191 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 GPAT3Q53EU6 434 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ACSM5Q6NUN0 579 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ATCAYQ86WG3 371 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 PRRG3Q9BZD7 231 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 TMEM38AQ9H6F2 299 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 SPATA7Q9P0W8 599 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 PGRMC2O15173 223 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 CDRT1O95170 752 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 GJA8P48165 433 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 NCBP2P52298 156 aaKnown RBP eCLIP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 CLDN2P57739 230 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 TUBA1BP68363 451 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF234Q14588 700 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 FAM214AQ32MH5 1076 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 C9orf64Q5T6V5 341 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 TYW3Q6IPR3 259 aaKnown RBP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 PODNL1Q6PEZ8 512 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 TUBA1AQ71U36 451 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF513Q8N8E2 541 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 OR6T1Q8NGN1 323 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 GATAD2BQ8WXI9 593 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ART5Q96L15 291 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF717Q9BY31 904 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 PLA2G12AQ9BZM1 189 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 MBNL1Q9NR56 388 aaKnown RBP20.19■□□□□ 0.82
TRIM28-201ENST00000253024 THSD1Q9NS62 852 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 SAGE1Q9NXZ1 904 aa20.19■□□□□ 0.82
TRIM28-201ENST00000253024 FOXE1O00358 373 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-201ENST00000253024 ASNA1O43681 348 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 DDCP20711 480 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 KRT33BQ14525 404 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 SPHARQ15513 63 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 ATAT1Q5SQI0 421 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 USP30Q70CQ3 517 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 KRT78Q8N1N4 520 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 MRPL43Q8N983 215 aaKnown RBP20.18■□□□□ 0.82
TRIM28-201ENST00000253024 NLGN4YQ8NFZ3 816 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-201ENST00000253024 SLC9A6Q92581 669 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 LRR1Q96L50 414 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 TEFMQ96QE5 360 aaKnown RBP20.18■□□□□ 0.82
TRIM28-201ENST00000253024 LHX9Q9NQ69 397 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 SNRNP200O75643 2136 aaKnown RBP20.18■□□□□ 0.82
TRIM28-201ENST00000253024 UGT2B17O75795 530 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 ACADLP28330 430 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 DUSP2Q05923 314 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 BAK1Q16611 211 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 NLRP8Q86W28 1048 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 GOT1L1Q8NHS2 421 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-201ENST00000253024 CXorf40AQ8TE69 158 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 C12orf66Q96MD2 445 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 C19orf43Q9BQ61 176 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 DPH7Q9BTV6 452 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 TMEM245Q9H330 911 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 TBC1D14Q9P2M4 693 aa20.18■□□□□ 0.82
TRIM28-201ENST00000253024 CCNKO75909 580 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 RBBP4Q09028 425 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 GINS1Q14691 196 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 LHFPL3Q86UP9 236 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 FAM129CQ86XR2 697 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 SMPDL3AQ92484 453 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 SDHCQ99643 169 aaPredicted RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms