RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SENP5Q96HI0 755 aaPredicted RBP17.03■□□□□ 0.32
CLN3-241ENST00000635861 IGSF5Q9NSI5 407 aa17.03■□□□□ 0.32
CLN3-241ENST00000635861 ATG4BQ9Y4P1 393 aa17.03■□□□□ 0.32
CLN3-241ENST00000635861 PCDHGB3Q9Y5G1 929 aa17.03■□□□□ 0.32
CLN3-241ENST00000635861 A0A087X1B8 175 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 FAM47E-STBD1D6RA91 191 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 UBXN8O00124 270 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 TOXO94900 526 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 PTX3P26022 381 aaPredicted RBP17.02■□□□□ 0.31
CLN3-241ENST00000635861 GALNSP34059 522 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 MAGEA4P43358 317 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 PIK3CGP48736 1102 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 PLTPP55058 493 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 RIPPLY3P57055 190 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 NUP107P57740 925 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 PMPCAQ10713 525 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 FOXO1Q12778 655 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 SLC10A1Q14973 349 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 SETDB1Q15047 1291 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 FAM83EQ2M2I3 478 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 SLC22A10Q63ZE4 541 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 B3GNT6Q6ZMB0 384 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 CMC1Q7Z7K0 106 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 HUS1BQ8NHY5 278 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 PAQR8Q8TEZ7 354 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 OR51B5Q9H339 312 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 SH2D2AQ9NP31 389 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 DMRT3Q9NQL9 472 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 PNPLA3Q9NST1 481 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 LYARQ9NX58 379 aaKnown RBP17.02■□□□□ 0.31
CLN3-241ENST00000635861 QPCTLQ9NXS2 382 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 CNIH4Q9P003 139 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 KCNN3Q9UGI6 736 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 ANGPTL3Q9Y5C1 460 aa17.02■□□□□ 0.31
CLN3-241ENST00000635861 ANKHD1Q8IWZ3 2542 aaKnown RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 A0A0G2JMM0 328 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 MYOCOSA0A1B0GUC4 107 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 A0A1W2PPB8 328 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 A0A1W2PRS3 328 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 OR6C76A6NM76 312 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 KIR3DP1A8MWS1 328 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 H0YIV9 168 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 PLPP1O14494 284 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 ZNF354AO60765 605 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 MTHFD2P13995 350 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 ALOX15P16050 662 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 MAGEA5P43359 124 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 MAN2A2P49641 1150 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 ALDH18A1P54886 795 aaKnown RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 MRPS25P82663 173 aaKnown RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 FOLH1Q04609 750 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 CKAP4Q07065 602 aaKnown RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 ASPHQ12797 758 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 CUL3Q13618 768 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 ACAP2Q15057 778 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 ZNF791Q3KP31 576 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 SPNS3Q6ZMD2 512 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 C9orf40Q8IXQ3 194 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 DMRTC2Q8IXT2 367 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 CLYBLQ8N0X4 340 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 TEX9Q8N6V9 391 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 FBXO25Q8TCJ0 367 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 FBF1Q8TES7 1133 aa17.01■□□□□ 0.31
CLN3-241ENST00000635861 SPACA9Q96E40 222 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 NPDC1Q9NQX5 325 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 TUBA8Q9NY65 449 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 BOKQ9UMX3 212 aaPredicted RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 TNPO3Q9Y5L0 923 aaKnown RBP17.01■□□□□ 0.31
CLN3-241ENST00000635861 FAM90A27PA6NNH2 459 aa17■□□□□ 0.31
CLN3-241ENST00000635861 KLK8O60259 260 aa17■□□□□ 0.31
CLN3-241ENST00000635861 CCL3P10147 92 aa17■□□□□ 0.31
CLN3-241ENST00000635861 GABRA1P14867 456 aa17■□□□□ 0.31
CLN3-241ENST00000635861 ZFP36L2P47974 494 aaKnown RBP17■□□□□ 0.31
CLN3-241ENST00000635861 KRTAP10-9P60411 292 aa17■□□□□ 0.31
CLN3-241ENST00000635861 ID2Q02363 134 aa17■□□□□ 0.31
CLN3-241ENST00000635861 PCBP2Q15366 365 aaKnown RBP eCLIP17■□□□□ 0.31
CLN3-241ENST00000635861 TESK1Q15569 626 aa17■□□□□ 0.31
CLN3-241ENST00000635861 WLSQ5T9L3 541 aa17■□□□□ 0.31
CLN3-241ENST00000635861 SLC29A4Q7RTT9 530 aa17■□□□□ 0.31
CLN3-241ENST00000635861 CCDC25Q86WR0 208 aa17■□□□□ 0.31
CLN3-241ENST00000635861 FBXW8Q8N3Y1 598 aa17■□□□□ 0.31
CLN3-241ENST00000635861 RPRMLQ8N4K4 120 aa17■□□□□ 0.31
CLN3-241ENST00000635861 NXNL1Q96CM4 212 aa17■□□□□ 0.31
CLN3-241ENST00000635861 TTYH2Q9BSA4 534 aa17■□□□□ 0.31
CLN3-241ENST00000635861 LDAHQ9H6V9 325 aa17■□□□□ 0.31
CLN3-241ENST00000635861 DDX31Q9H8H2 851 aaKnown RBP17■□□□□ 0.31
CLN3-241ENST00000635861 ACTR8Q9H981 624 aa17■□□□□ 0.31
CLN3-241ENST00000635861 WDR41Q9HAD4 459 aa17■□□□□ 0.31
CLN3-241ENST00000635861 SEC23IPQ9Y6Y8 1000 aaKnown RBP17■□□□□ 0.31
CLN3-241ENST00000635861 SETD2Q9BYW2 2564 aaPredicted RBP16.99■□□□□ 0.31
CLN3-241ENST00000635861 NKX2-6A6NCS4 301 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 G3V3Y1 287 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 SAP18O00422 153 aaKnown RBP16.99■□□□□ 0.31
CLN3-241ENST00000635861 PROM1O43490 865 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 FAM155BO75949 473 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 NADKO95544 446 aaPredicted RBP16.99■□□□□ 0.31
CLN3-241ENST00000635861 TUBBP07437 444 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 GFAPP14136 432 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 SERPINB3P29508 390 aa16.99■□□□□ 0.31
CLN3-241ENST00000635861 DNASE1L1P49184 302 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms