RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TANKQ92844 425 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 MAGOHBQ96A72 148 aaKnown RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 PTCD3Q96EY7 689 aaKnown RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 PBKQ96KB5 322 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ZNF597Q96LX8 424 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 DACH2Q96NX9 599 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 KRT12Q99456 494 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 NDNQ99608 321 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PIP5K1AQ99755 562 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SH3GL2Q99962 352 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 DOHHQ9BU89 302 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 BDH2Q9BUT1 245 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PHACTR1Q9C0D0 580 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PRDM14Q9GZV8 571 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 KLHL31Q9H511 634 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 WDR41Q9HAD4 459 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 DMRT3Q9NQL9 472 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 TUBA8Q9NY65 449 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 CTNNAL1Q9UBT7 734 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PHF11Q9UIL8 331 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ZNF223Q9UK11 482 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 CBLCQ9ULV8 474 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 OARD1Q9Y530 152 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PINLYPA6NC86 204 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 CLCA1A8K7I4 914 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 KIF2AO00139 706 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 PGRMC1O00264 195 aaKnown RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 TMCC2O75069 709 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 STK16O75716 305 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 WDR47O94967 919 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 SCELO95171 688 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 ACTL6AO96019 429 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 C1QAP02745 245 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 S100BP04271 92 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 CCL3P10147 92 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 BMP7P18075 431 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 FPR1P21462 350 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 HIST1H1TP22492 207 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 CHMP24386 653 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 TACR1P25103 407 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 CTSSP25774 331 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 GDF1P27539 372 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 GALNSP34059 522 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 GGT5P36269 586 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 BUD31P41223 144 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 SLC6A12P48065 614 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 MASP1P48740 699 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 DNASE1L1P49184 302 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 PCYT1AP49585 367 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 CDKN2DP55273 166 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 ATP6V0D1P61421 351 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 NKX6-1P78426 367 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 PHEXP78562 749 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 ASPHQ12797 758 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 RPS6KA2Q15349 733 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 PPP1R7Q15435 360 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 TBCCQ15814 346 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 ZNF791Q3KP31 576 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 NHSL2Q5HYW2 709 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 C6orf163Q5TEZ5 329 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 ANKRD22Q5VYY1 191 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 HLA-DQA1Q5Y7H0 255 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 TMEM139Q8IV31 216 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 LIX1LQ8IVB5 337 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.79□□□□□ -1.48
CUX1-220ENST00000607092 ST13P4Q8IZP2 240 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 AMER2Q8N7J2 671 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 NAT8LQ8N9F0 302 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 BBOF1Q8ND07 529 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 FAM13CQ8NE31 585 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 SPATA3Q8NHX4 192 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 NRGNQ92686 78 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 TP53INP1Q96A56 240 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 WDR34Q96EX3 536 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 TSPAN17Q96FV3 270 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 CMTM7Q96FZ5 175 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 SENP5Q96HI0 755 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 FBXL20Q96IG2 436 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 PWWP2AQ96N64 755 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 QRFPRQ96P65 431 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 TM9SF2Q99805 663 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 SFXN3Q9BWM7 321 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 PIGMQ9H3S5 423 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 ZNF395Q9H8N7 513 aaPredicted RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 CALHM2Q9HA72 323 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 SNX15Q9NRS6 342 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 DNAJC11Q9NVH1 559 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 WWOXQ9NZC7 414 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 FETUBQ9UGM5 382 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 PTBP2Q9UKA9 531 aaKnown RBP5.79□□□□□ -1.48
CUX1-220ENST00000607092 CFL2Q9Y281 166 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 LIPGQ9Y5X9 500 aa5.79□□□□□ -1.48
CUX1-220ENST00000607092 A0A0G2JMM0 328 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 A0A1W2PPB8 328 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 A0A1W2PRS3 328 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 MBD3L4A6NDZ8 208 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 MBD3L3A6NE82 208 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 MBD3L5A6NJ08 208 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 KIR3DP1A8MWS1 328 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 EEF1E1-BLOC1S5C9J1V9 151 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms