RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TRAP1Q12931 704 aaKnown RBP3.97□□□□□ -1.77
PRPF39-209ENST00000556353 CUL3Q13618 768 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 CUL4AQ13619 759 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 KRTAP13-3Q3SY46 172 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 USH1GQ495M9 461 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 OR4A47Q6IF82 309 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 PLBD1Q6P4A8 553 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 ABRAXAS1Q6UWZ7 409 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 STOX1Q6ZVD7 989 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 SLC25A42Q86VD7 318 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 DNAAF5Q86Y56 855 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 KLHDC1Q8N7A1 406 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 MOB3AQ96BX8 217 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 FAM218AQ96MZ4 157 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 ZNF577Q9BSK1 485 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 MRPL9Q9BYD2 267 aaKnown RBP3.97□□□□□ -1.77
PRPF39-209ENST00000556353 NACAP1Q9BZK3 213 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 PARLQ9H300 379 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 Q9H8V8 135 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 RABL2AQ9UBK7 228 aaPredicted RBP3.97□□□□□ -1.77
PRPF39-209ENST00000556353 IL17BQ9UHF5 180 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 SLC24A2Q9UI40 661 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 CPSF3Q9UKF6 684 aaKnown RBP3.97□□□□□ -1.77
PRPF39-209ENST00000556353 OBSCNQ5VST9 7968 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 DOCK8Q8NF50 2099 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 NCOR2Q9Y618 2525 aa3.97□□□□□ -1.77
PRPF39-209ENST00000556353 TPRP12270 2363 aaKnown RBP3.97□□□□□ -1.77
PRPF39-209ENST00000556353 FRYQ5TBA9 3013 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.96□□□□□ -1.78
PRPF39-209ENST00000556353 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.96□□□□□ -1.78
PRPF39-209ENST00000556353 TMCO5BA8MYB1 307 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ZZEF1O43149 2961 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 CYTH3O43739 400 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 CA3P07451 260 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ZNF286BP0CG31 522 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 UBASH3AP57075 661 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 DEFB103AP81534 67 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 DHODHQ02127 395 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 QRICH1Q2TAL8 776 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 MS4A18Q3C1V0 323 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 GPR33Q49SQ1 333 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ARMC4Q5T2S8 1044 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ITPRIPL1Q6GPH6 555 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 CWC27Q6UX04 472 aaKnown RBP3.96□□□□□ -1.78
PRPF39-209ENST00000556353 LRRC49Q8IUZ0 686 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ZNF713Q8N859 430 aaPredicted RBP3.96□□□□□ -1.78
PRPF39-209ENST00000556353 NOA1Q8NC60 698 aaKnown RBP3.96□□□□□ -1.78
PRPF39-209ENST00000556353 OR6J1Q8NGC5 347 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 EXOC6Q8TAG9 804 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 SPATA18Q8TC71 538 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 CHURC1Q8WUH1 139 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 PSMB7Q99436 277 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 CHCHD5Q9BSY4 110 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 PDE7BQ9NP56 450 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 TBC1D22BQ9NU19 505 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 EXOC1Q9NV70 894 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ZNHIT6Q9NWK9 470 aaKnown RBP3.96□□□□□ -1.78
PRPF39-209ENST00000556353 TBK1Q9UHD2 729 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 ITM2BQ9Y287 266 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 SNX5Q9Y5X3 404 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 CFAP47Q6ZTR5 3102 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 GPR179Q6PRD1 2367 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 LAMA5O15230 3695 aa3.96□□□□□ -1.78
PRPF39-209ENST00000556353 FRMPD4Q14CM0 1322 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 RAD50Q92878 1312 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 OTOGLQ3ZCN5 2332 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CHD6Q8TD26 2715 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 TRBV4-1A0A0J9YWV2 114 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 SHISA7A6NL88 538 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 BOLA2-SMG1P6H3BVE0 249 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 K7EQD1 137 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 NEMFO60524 1076 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CABYRO75952 493 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 IQCF3P0C7M6 154 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 SFTPCP11686 197 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 PORP16435 677 aaPredicted RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CTNNA1P35221 906 aaKnown RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 ETV5P41161 510 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 STK4Q13043 487 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 ZNF177Q13360 481 aaPredicted RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 MEA1Q16626 185 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CCDC122Q5T0U0 273 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 GARNL3Q5VVW2 1013 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 IRGCQ6NXR0 463 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CATSPER4Q7RTX7 472 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 DEFB128Q7Z7B8 93 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CCAR2Q8N163 923 aaKnown RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 ARL10Q8N8L6 244 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 BRSK1Q8TDC3 778 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 TAAR1Q96RJ0 339 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 MTG1Q9BT17 334 aaPredicted RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 AP1M1Q9BXS5 423 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 ANKZF1Q9H8Y5 726 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 HAO2Q9NYQ3 351 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 GTSE1Q9NYZ3 720 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 THAP10Q9P2Z0 257 aaPredicted RBP3.95□□□□□ -1.78
PRPF39-209ENST00000556353 CTNNA3Q9UI47 895 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 MAD2L2Q9UI95 211 aa3.95□□□□□ -1.78
PRPF39-209ENST00000556353 RNF150Q9ULK6 438 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms