RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CFAP74Q9C0B2 1584 aa4.36□□□□□ -1.71
SF3B1-212ENST00000496458 PREX2Q70Z35 1606 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 IGHV3-16A0A0C4DH30 117 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 RNF103-CHMP3A0A140T963 221 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 A0A1B0GTH9 108 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 ARHGEF37A1IGU5 675 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 PALMO75781 387 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 BCAS2O75934 225 aaPredicted RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 SNX4O95219 450 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 SIX3O95343 332 aaPredicted RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 RENP00797 406 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 VIMP08670 466 aaKnown RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 KRTAP1-4P0C5Y4 121 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 PRPHP41219 470 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 CNTN1Q12860 1018 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 PTK6Q13882 451 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 RNF212Q495C1 297 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 SPOUT1Q5T280 376 aaKnown RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 LEMD1Q68G75 181 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 ZNF770Q6IQ21 691 aaPredicted RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 CCBE1Q6UXH8 406 aaPredicted RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 C17orf107Q6ZR85 190 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 PEX5LQ8IYB4 626 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 SIX6OS1Q8N1H7 587 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 GPD1LQ8N335 351 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 RHOXF1Q8NHV9 184 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 CRACR2AQ9BSW2 395 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 RRAGDQ9NQL2 400 aaPredicted RBP4.35□□□□□ -1.71
SF3B1-212ENST00000496458 NINJ2Q9NZG7 142 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 LAMP5Q9UJQ1 280 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 GMEB2Q9UKD1 530 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 PCDHGA1Q9Y5H4 931 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 MAP3K1Q13233 1512 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 RICTORQ6R327 1708 aa4.35□□□□□ -1.71
SF3B1-212ENST00000496458 A0A1W2PRV1 198 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 HTR3EA5X5Y0 456 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 RPL37AP8A6NKH3 93 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 ZNF732B4DXR9 585 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 SMPD2O60906 423 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 ANGPTL1O95841 491 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 SUPT20HL2P0C7V6 817 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 SLC1A3P43003 542 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 NT5C2P49902 561 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 ARFIP1P53367 373 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 MRPL28Q13084 256 aaKnown RBP4.34□□□□□ -1.71
SF3B1-212ENST00000496458 IFT88Q13099 833 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 TMED1Q13445 227 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 TRADDQ15628 312 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 CDO1Q16878 200 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 CEP55Q53EZ4 464 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 SLC27A4Q6P1M0 643 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 OLFM4Q6UX06 510 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 VITQ6UXI7 678 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 TMUB2Q71RG4 321 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 ADCK1Q86TW2 530 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 MEX3DQ86XN8 651 aaKnown RBP4.34□□□□□ -1.71
SF3B1-212ENST00000496458 MRPL43Q8N983 215 aaKnown RBP4.34□□□□□ -1.71
SF3B1-212ENST00000496458 CNNM3Q8NE01 707 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 CD99L2Q8TCZ2 262 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 BSCL2Q96G97 398 aaPredicted RBP4.34□□□□□ -1.71
SF3B1-212ENST00000496458 INTS14Q96SY0 518 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 KRT23Q9C075 422 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 HSD3B7Q9H2F3 369 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 DEPPQ9NTK1 212 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 LEF1Q9UJU2 399 aaPredicted RBP4.34□□□□□ -1.71
SF3B1-212ENST00000496458 APPL1Q9UKG1 709 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 YEATS2Q9ULM3 1422 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 TRAPPC8Q9Y2L5 1435 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 ARHGEF12Q9NZN5 1544 aa4.34□□□□□ -1.71
SF3B1-212ENST00000496458 ITSN2Q9NZM3 1697 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 FRMPD1Q5SYB0 1578 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 SAMD9LQ8IVG5 1584 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 SYCP2Q9BX26 1530 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ZNF518AQ6AHZ1 1483 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 POGZQ7Z3K3 1410 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ANHXE9PGG2 379 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 TRIM16O95361 564 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 OPN1MWP04001 364 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 HMOX1P09601 288 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 TSPY4P0CV99 314 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 TSPY10P0CW01 314 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 OPN1MW2P0DN77 364 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 OPN1MW3P0DN78 364 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 CCNA2P20248 432 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ARF5P84085 180 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 RCN2Q14257 317 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ECSCRQ19T08 205 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ANKRD20A4Q4UJ75 823 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ANKRD20A8PQ5CZ79 823 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ARMCX4Q5H9R4 360 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ANKRD20A2Q5SQ80 823 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ANKRD20A1Q5TYW2 823 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 ANKRD20A3Q5VUR7 823 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 SPATA19Q7Z5L4 167 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 DZIP1Q86YF9 867 aaKnown RBP4.33□□□□□ -1.72
SF3B1-212ENST00000496458 CNTN4Q8IWV2 1026 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 TDHQ8IZJ6 230 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 SYCP3Q8IZU3 236 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 GMCL1P1Q8NEA9 526 aa4.33□□□□□ -1.72
SF3B1-212ENST00000496458 SMPDL3AQ92484 453 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms