RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TLX2O43763 284 aaPredicted RBP15.57■□□□□ 0.08
SDC4-201ENST00000372733 ATG13O75143 517 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 ALX3O95076 343 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 H1F0P07305 194 aaKnown RBP15.57■□□□□ 0.08
SDC4-201ENST00000372733 SDC2P34741 201 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 GPC1P35052 558 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 GSTM5P46439 218 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 EPHB3P54753 998 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 E2F2Q14209 437 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 YIF1BQ5BJH7 314 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 SLC35F1Q5T1Q4 408 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 GALNT6Q8NCL4 622 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 OR7G1Q8NGA0 311 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 OR52I1Q8NGK6 324 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 PDXPQ96GD0 296 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 TMEM169Q96HH4 297 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 FRMD6Q96NE9 622 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 SLA2Q9H6Q3 261 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 RNF121Q9H920 327 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 SLAMF7Q9NQ25 335 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 SEMA3GQ9NS98 782 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 DYRK1BQ9Y463 629 aa15.57■□□□□ 0.08
SDC4-201ENST00000372733 SPIN1Q9Y657 262 aaPredicted RBP15.57■□□□□ 0.08
SDC4-201ENST00000372733 MYOFQ9NZM1 2061 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 TNFRSF10AO00220 468 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 PLA2G10O15496 165 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 IL1AP01583 271 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 VIPR1P32241 457 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 DGKGP49619 791 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 CAV3P56539 151 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 RPS25P62851 125 aaKnown RBP15.56■□□□□ 0.08
SDC4-201ENST00000372733 TARDBPQ13148 414 aaKnown RBP eCLIP15.56■□□□□ 0.08
SDC4-201ENST00000372733 MPP7Q5T2T1 576 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 HENMT1Q5T8I9 393 aaKnown RBP15.56■□□□□ 0.08
SDC4-201ENST00000372733 PAMR1Q6UXH9 720 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 ABI3BPQ7Z7G0 1075 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 CPXM2Q8N436 756 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 FOPNLQ96NB1 174 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 RACGAP1Q9H0H5 632 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 FOXE1O00358 373 aaPredicted RBP15.56■□□□□ 0.08
SDC4-201ENST00000372733 FAAHO00519 579 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 TP53P04637 393 aaPredicted RBP15.56■□□□□ 0.08
SDC4-201ENST00000372733 C1GALT1C1LP0DN25 315 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 CHRNB1P11230 501 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 UQCRC2P22695 453 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 RPL3P39023 403 aaKnown RBP15.56■□□□□ 0.08
SDC4-201ENST00000372733 PNLIPRP1P54315 467 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 OR2G6Q5TZ20 316 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 ERAP2Q6P179 960 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 HTR3DQ70Z44 454 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 GAREM2Q75VX8 874 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 ENKURQ8TC29 256 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 MVB12BQ9H7P6 319 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 TOR4AQ9NXH8 423 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 MALT1Q9UDY8 824 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 SLC25A13Q9UJS0 675 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 HCN2Q9UL51 889 aa15.56■□□□□ 0.08
SDC4-201ENST00000372733 OBSL1O75147 1896 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 ANKDD1BA6NHY2 528 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 ERVH48-1M5A8F1 160 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 POLR1CO15160 346 aaPredicted RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 C1orf105O95561 183 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 ALPPP05187 535 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 MLLT3P42568 568 aaPredicted RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 PRLHRP49683 370 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 WDR5P61964 334 aaKnown RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 LSM11P83369 360 aaKnown RBP eCLIP15.55■□□□□ 0.08
SDC4-201ENST00000372733 CHRNEQ04844 493 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 DDI2Q5TDH0 399 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 PPP2R2DQ66LE6 453 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 TMEM220Q6QAJ8 160 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 CADM2Q8N3J6 435 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 TRAM1L1Q8N609 369 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 ATP6V1C2Q8NEY4 427 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 SLC7A13Q8TCU3 470 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 JPH3Q8WXH2 748 aaPredicted RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 EFCAB11Q9BUY7 163 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 MCOLN1Q9GZU1 580 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 ABCG4Q9H172 646 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 RPRD1BQ9NQG5 326 aaKnown RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 C5AR2Q9P296 337 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 NDRG2Q9UN36 371 aaKnown RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 ZNF30P17039 623 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 DCDC1P59894 354 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 QPRTQ15274 297 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.55■□□□□ 0.08
SDC4-201ENST00000372733 SYT14P1Q58G82 188 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 LYPD8Q6UX82 237 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 COMTD1Q86VU5 262 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 CLDN22Q8N7P3 220 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 GDPD1Q8N9F7 314 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 OR2A12Q8NGT7 310 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 NECTIN4Q96NY8 510 aa15.55■□□□□ 0.08
SDC4-201ENST00000372733 MRPL17Q9NRX2 175 aaKnown RBP15.55■□□□□ 0.08
SDC4-201ENST00000372733 PLXNA2O75051 1894 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 OR6C70A6NIJ9 312 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 SH3BP5O60239 455 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 CPNE3O75131 537 aaKnown RBP15.54■□□□□ 0.08
SDC4-201ENST00000372733 RAB36O95755 333 aa15.54■□□□□ 0.08
SDC4-201ENST00000372733 LGI1O95970 557 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms