RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MSH2P43246 934 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 SSR2P43308 183 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 RPL21P46778 160 aaKnown RBP13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ARL4CP56559 192 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 SORDQ00796 357 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 POU4F1Q01851 419 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 IRF8Q02556 426 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 KEAP1Q14145 624 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 DOC2AQ14183 400 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF460Q14592 562 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 DEFB113Q30KQ7 82 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 C18orf21Q32NC0 220 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ACSF3Q4G176 576 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ADGRD1Q6QNK2 874 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF793Q6ZN11 406 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 SYDE1Q6ZW31 735 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 SLC29A4Q7RTT9 530 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 C9orf40Q8IXQ3 194 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 FAM13CQ8NE31 585 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ANKRD49Q8WVL7 239 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 TSPAN17Q96FV3 270 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF597Q96LX8 424 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 OSBPL9Q96SU4 736 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 KRT12Q99456 494 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 CENPKQ9BS16 269 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 DOHHQ9BU89 302 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 MS4A8Q9BY19 250 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 SLC6A15Q9H2J7 730 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 RHOJQ9H4E5 214 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 ADGRE2Q9UHX3 823 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 CHCHD2Q9Y6H1 151 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 NCKAP5O14513 1909 aa13.58□□□□□ -0.23
CCDC88B-201ENST00000301897 C15orf38-AP3S2A0A0A6YYH1 394 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 IQANK1A0A1B0GTG1 560 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 ANKRD33BA6NCL7 494 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 LRRC3CA6NJW4 275 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 OR6C76A6NM76 312 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 TP53I11O14683 189 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 TAPBPO15533 448 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 S100BP04271 92 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 TACR1P25103 407 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 IVDP26440 423 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 GDF1P27539 372 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 ID2Q02363 134 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 SNTB1Q13884 538 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 HP1BP3Q5SSJ5 553 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 PRAMEF20Q5VT98 475 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 TMEM198Q66K66 360 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 SEM1Q6ZVN7 128 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 UBE3DQ7Z6J8 389 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 TAGAPQ8N103 731 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 ZNF473Q8WTR7 871 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 CMTM7Q96FZ5 175 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 CAPZA3Q96KX2 299 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 TMEM79Q9BSE2 394 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 GSX1Q9H4S2 264 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 RPF2Q9H7B2 306 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 NEUROD4Q9HD90 331 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 PHF11Q9UIL8 331 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 IKBKGQ9Y6K9 419 aa13.58□□□□□ -0.24
CCDC88B-201ENST00000301897 FAM171A2A8MVW0 826 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 FGF17O60258 216 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 PRAMEF4O60810 478 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 ATE1O95260 518 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 C1QAP02745 245 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 ALOX15P16050 662 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 HSPA7P48741 367 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 TRPC1P48995 793 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 ATP6V0D1P61421 351 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 CHIT1Q13231 466 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 E2F2Q14209 437 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 NTRK2Q16620 822 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 PRAMEF9Q5VWM5 478 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 NSUN5P2Q63ZY6 315 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 ADNP2Q6IQ32 1131 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 LYPD8Q6UX82 237 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 RNF111Q6ZNA4 994 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 LRRC70Q7Z2Q7 622 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 ST13P4Q8IZP2 240 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 PDPRQ8NCN5 879 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 TNIP2Q8NFZ5 429 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 OR10G3Q8NGC4 313 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 JSRP1Q96MG2 331 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 PROK2Q9HC23 129 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 MOCS1Q9NZB8 636 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 CD274Q9NZQ7 290 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 PTBP2Q9UKA9 531 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 TLN2Q9Y4G6 2542 aa13.57□□□□□ -0.24
CCDC88B-201ENST00000301897 TRIM3O75382 744 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 SNX4O95219 450 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 CCDC166P0CW27 439 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 CD22P20273 847 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 GALNSP34059 522 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 OPRM1P35372 400 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 BUD31P41223 144 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 TMED10P49755 219 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 RAP1GDS1P52306 607 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 ARFIP1P53367 373 aa13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 RPP38P78345 283 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-201ENST00000301897 LTBQ06643 244 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms