RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 AMDHD1Q96NU7 426 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 MS4A4EQ96PG1 132 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 OR2A14Q96R47 310 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 MYOCQ99972 504 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 TUBA1CQ9BQE3 449 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 SEMA6AQ9H2E6 1030 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ANKRD19PQ9H560 264 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 C6orf106Q9H6K1 298 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 ANKHQ9HCJ1 492 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 BCL2L10Q9HD36 194 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 ZCCHC3Q9NUD5 404 aaKnown RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 HRASLS2Q9NWW9 162 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 NTMQ9P121 344 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 SH2B3Q9UQQ2 575 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 IFT52Q9Y366 437 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 PCYT1BQ9Y5K3 369 aaPredicted RBP7.13□□□□□ -1.27
VPS39-204ENST00000561818 SNX8Q9Y5X2 465 aa7.13□□□□□ -1.27
VPS39-204ENST00000561818 PLXND1Q9Y4D7 1925 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 FEZF1A0PJY2 475 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 TLCD2A6NGC4 264 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 A6NHS1 94 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SAC3D1A6NKF1 404 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 M0R3G1 203 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CLDN4O14493 209 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SLC16A6O15403 523 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PROM1O43490 865 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 NARSO43776 548 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 NUDT21O43809 227 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 NOL3O60936 208 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 UBXN7O94888 489 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SEMG1P04279 462 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 NTRK1P04629 796 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 GSNP06396 782 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CCDC159P0C7I6 412 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PABPC4LP0CB38 370 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 PNLIPP16233 465 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CPN2P22792 545 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 IGFBP5P24593 272 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PSMB5P28074 263 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 GALNSP34059 522 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 RYKP34925 604 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CAPZBP47756 277 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 ERFP50548 548 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PPP2R2BQ00005 443 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PLIN5Q00G26 463 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 MEF2AQ02078 507 aaPredicted RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 RPL6Q02878 288 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 GAB1Q13480 694 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SELPLGQ14242 412 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CYBRD1Q53TN4 286 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 PRPF38BQ5VTL8 546 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 KIAA1614Q5VZ46 1190 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 HMBOX1Q6NT76 420 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 THAP5Q7Z6K1 395 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 STK32CQ86UX6 486 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PLXDC1Q8IUK5 500 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SPNS2Q8IVW8 549 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 TAGAPQ8N103 731 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SLC22A18ASQ8N1D0 253 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 DEPDC4Q8N2C3 294 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PARP8Q8N3A8 854 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 FBXL6Q8N531 539 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CSNK1A1LQ8N752 337 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 C19orf47Q8N9M1 422 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 FAM46DQ8NEK8 389 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 OR10G6Q8NH81 332 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 WDR48Q8TAF3 677 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 ZNF675Q8TD23 568 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 NETO1Q8TDF5 533 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SLC37A2Q8TED4 501 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PHF10Q8WUB8 498 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 SLC35B4Q969S0 331 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 HSH2DQ96JZ2 352 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 TRNT1Q96Q11 434 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 OR2A5Q96R48 311 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SLC38A3Q99624 504 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 TEX12Q9BXU0 123 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SLC6A17Q9H1V8 727 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SPNS1Q9H2V7 528 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 IKZF5Q9H5V7 419 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 XKR8Q9H6D3 395 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CAAP1Q9H8G2 361 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 TBC1D17Q9HA65 648 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 FANCEQ9HB96 536 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 HHATLQ9HCP6 504 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PRDM7Q9NQW5 492 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 PILRAQ9UKJ1 303 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 TMCC3Q9ULS5 477 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CA14Q9ULX7 337 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 CDC14AQ9UNH5 594 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SATB2Q9UPW6 733 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 POFUT2Q9Y2G5 429 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SIT1Q9Y3P8 196 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 SAMHD1Q9Y3Z3 626 aaKnown RBP7.12□□□□□ -1.27
VPS39-204ENST00000561818 ASB4Q9Y574 426 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 BRWD1Q9NSI6 2320 aa7.12□□□□□ -1.27
VPS39-204ENST00000561818 LAMA2P24043 3122 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 A0A1W2PR77 199 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 HTR3EA5X5Y0 456 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms