RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 DENND5AQ6IQ26 1287 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 ADAM5Q6NVV9 412 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 C17orf64Q86WR6 236 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CPNE8Q86YQ8 564 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 RNF10Q8N5U6 811 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 ELOA3Q8NG57 546 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 OR4L1Q8NH43 312 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 SREK1Q8WXA9 508 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 SPACA9Q96E40 222 aaPredicted RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 C1orf159Q96HA4 380 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 UCN2Q96RP3 112 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 TUBA1CQ9BQE3 449 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 TACO1Q9BSH4 297 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 EML4Q9HC35 981 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 FAIMQ9NVQ4 179 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 PTBP2Q9UKA9 531 aaKnown RBP8.35□□□□□ -1.07
USP28-205ENST00000537706 IKBKGQ9Y6K9 419 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CAPN6Q9Y6Q1 641 aa8.35□□□□□ -1.07
USP28-205ENST00000537706 CR1P17927 2039 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 RAI1Q7Z5J4 1906 aaPredicted RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 FRG2CA6NGY1 282 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 BTNL10A8MVZ5 291 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 FAM157AC9JC47 383 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 GFYI3L273 518 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 ZNF189O75820 626 aaPredicted RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 PLAUP00749 431 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 ZNF888P0CJ79 500 aaPredicted RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 PECAM1P16284 738 aaPredicted RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 DPP4P27487 766 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 COILP38432 576 aaPredicted RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 RPP38P78345 283 aaKnown RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 SCGB2A2Q13296 93 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 MICALCLQ6ZW33 695 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 CHMP1BQ7LBR1 199 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 PACS2Q86VP3 889 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 BANPQ8N9N5 519 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 MCUQ8NE86 351 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 OR10H5Q8NGA6 315 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 ZNF480Q8WV37 535 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 PROX1Q92786 737 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 ZNF845Q96IR2 970 aaPredicted RBP8.34□□□□□ -1.07
USP28-205ENST00000537706 RUNDC3BQ96NL0 473 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 TMEM204Q9BSN7 226 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 OR8D2Q9GZM6 311 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 LRRC40Q9H9A6 602 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 NENFQ9UMX5 172 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 WIF1Q9Y5W5 379 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 ZANQ9Y493 2812 aa8.34□□□□□ -1.07
USP28-205ENST00000537706 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.34□□□□□ -1.088e-9■■■■□ 25.3
USP28-205ENST00000537706 A0A087X0T9 212 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TMEM89A2RUT3 159 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CAPN14A8MX76 684 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TP53I11O14683 189 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 PSMD3O43242 534 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 KLF4O43474 513 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 PSIP1O75475 530 aaKnown RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 SNX4O95219 450 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SLC16A8O95907 504 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TUBBP07437 444 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CSF3P09919 207 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 H2AFZP0C0S5 128 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 FAM228BP0C875 321 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CPN1P15169 458 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 PAMP19021 973 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 USF1P22415 310 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 PSMA3P25788 255 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SLCO1A2P46721 670 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SRYQ05066 204 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 ASPHQ12797 758 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 RCN2Q14257 317 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 ZNF791Q3KP31 576 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 CCDC181Q5TID7 509 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 LRRC38Q5VT99 294 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 ANKRD34AQ69YU3 496 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TREML4Q6UXN2 200 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 H2AFVQ71UI9 128 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 WFDC8Q8IUA0 241 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CDKL3Q8IVW4 592 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 C7orf57Q8NEG2 295 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CTNNBL1Q8WYA6 563 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 DTNBP1Q96EV8 351 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 GORASP1Q9BQQ3 440 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 OCEL1Q9H607 264 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP28-205ENST00000537706 ZNF446Q9NWS9 450 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SNX12Q9UMY4 172 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 RNF115Q9Y4L5 304 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 MAGED1Q9Y5V3 778 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 MEGF8Q7Z7M0 2845 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 A0A096LNT2 108 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CCDC151A5D8V7 595 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 MROH6A6NGR9 719 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 H3BMM5 538 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 PFDN6O15212 129 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 DYRK3O43781 588 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 NDUFS3O75489 264 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TNFSF13O75888 250 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 FTCDO95954 541 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms