RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 PDK4Q16654 411 aa21.73■■□□□ 1.07
CPSF1-202ENST00000527827 SULT1C3Q6IMI6 304 aa21.73■■□□□ 1.07
CPSF1-202ENST00000527827 SYDE1Q6ZW31 735 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 WDR53Q7Z5U6 358 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 SRFBP1Q8NEF9 429 aaKnown RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 ZNF473Q8WTR7 871 aaKnown RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 SENP5Q96HI0 755 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 GPATCH1Q9BRR8 931 aaKnown RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 EXO5Q9H790 373 aa21.73■■□□□ 1.07
CPSF1-202ENST00000527827 ZNF703Q9H7S9 590 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 CAB39LQ9H9S4 337 aa21.73■■□□□ 1.07
CPSF1-202ENST00000527827 ST6GALNAC2Q9UJ37 374 aa21.73■■□□□ 1.07
CPSF1-202ENST00000527827 PTBP2Q9UKA9 531 aaKnown RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 MTO1Q9Y2Z2 717 aaKnown RBP21.73■■□□□ 1.07
CPSF1-202ENST00000527827 E7ESA3 106 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 FGF17O60258 216 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 SEC31AO94979 1220 aaKnown RBP21.72■■□□□ 1.07
CPSF1-202ENST00000527827 SCELO95171 688 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 IGKV3-11P04433 115 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 GABRA1P14867 456 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 HIST1H1TP22492 207 aaPredicted RBP21.72■■□□□ 1.07
CPSF1-202ENST00000527827 MSH2P43246 934 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 POU4F1Q01851 419 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 CHIT1Q13231 466 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 LAPTM5Q13571 262 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 E2F2Q14209 437 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 SLC22A10Q63ZE4 541 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 DGAT2L6Q6ZPD8 337 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 SEM1Q6ZVN7 128 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 OR4N5Q8IXE1 308 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 PDPRQ8NCN5 879 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 PAQR8Q8TEZ7 354 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 PROK2Q9HC23 129 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 NSMCE4AQ9NXX6 385 aa21.72■■□□□ 1.07
CPSF1-202ENST00000527827 HRKO00198 91 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 SH3BGRLO75368 114 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 CCDC166P0CW27 439 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 CD1DP15813 335 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 HOXB4P17483 251 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-202ENST00000527827 CPN2P22792 545 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 CASP2P42575 452 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 STT3AP46977 705 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 SLC12A2P55011 1212 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 IRF8Q02556 426 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 TBCCQ15814 346 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 HIST2H2ACQ16777 129 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-202ENST00000527827 PAGE2BQ5JRK9 111 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 PRAMEF20Q5VT98 475 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 HIST2H2AA3Q6FI13 130 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 KLHL7Q8IXQ5 586 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 CHDHQ8NE62 594 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-202ENST00000527827 SLC22A8Q8TCC7 542 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 SPACA9Q96E40 222 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-202ENST00000527827 ZFP64Q9NPA5 681 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 RASSF1Q9NS23 344 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 B4GALT7Q9UBV7 327 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 SPACA6W5XKT8 324 aa21.71■■□□□ 1.07
CPSF1-202ENST00000527827 LRRC3CA6NJW4 275 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 FAM47E-STBD1D6RA91 191 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 PHGDHO43175 533 aaKnown RBP21.7■■□□□ 1.06
CPSF1-202ENST00000527827 COX7A2P14406 83 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 KLK2P20151 261 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 KIR2DL3P43628 341 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 DR1Q01658 176 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 TMEM35AQ53FP2 167 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 ULK2Q8IYT8 1036 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 LRRC25Q8N386 305 aaPredicted RBP21.7■■□□□ 1.06
CPSF1-202ENST00000527827 FBXW8Q8N3Y1 598 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 SLC15A4Q8N697 577 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 RELL2Q8NC24 303 aaPredicted RBP21.7■■□□□ 1.06
CPSF1-202ENST00000527827 BBOF1Q8ND07 529 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 PPWD1Q96BP3 646 aaKnown RBP21.7■■□□□ 1.06
CPSF1-202ENST00000527827 DGAT2Q96PD7 388 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 SLC6A15Q9H2J7 730 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 CLEC4MQ9H2X3 399 aaPredicted RBP21.7■■□□□ 1.06
CPSF1-202ENST00000527827 TRMT1Q9NXH9 659 aaKnown RBP21.7■■□□□ 1.06
CPSF1-202ENST00000527827 CD274Q9NZQ7 290 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 CRIM1Q9NZV1 1036 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 PCDHGB3Q9Y5G1 929 aa21.7■■□□□ 1.06
CPSF1-202ENST00000527827 SAP18O00422 153 aaKnown RBP21.69■■□□□ 1.06
CPSF1-202ENST00000527827 SYT5O00445 386 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 CCNT2O60583 730 aaKnown RBP21.69■■□□□ 1.06
CPSF1-202ENST00000527827 TGFB1P01137 390 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 KCNJ2P63252 427 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 CEBPEQ15744 281 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 AP5B1Q2VPB7 878 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 LAS2Q8IYD9 372 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 C7orf57Q8NEG2 295 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 SORBS1Q9BX66 1292 aaKnown RBP21.69■■□□□ 1.06
CPSF1-202ENST00000527827 CD244Q9BZW8 370 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 PHACTR1Q9C0D0 580 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 ACKR4Q9NPB9 350 aa21.69■■□□□ 1.06
CPSF1-202ENST00000527827 BOKQ9UMX3 212 aaPredicted RBP21.69■■□□□ 1.06
CPSF1-202ENST00000527827 CHCHD2Q9Y6H1 151 aaPredicted RBP21.69■■□□□ 1.06
CPSF1-202ENST00000527827 MPDZO75970 2070 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 CXorf49A8MYA2 514 aaPredicted RBP21.68■■□□□ 1.06
CPSF1-202ENST00000527827 SSR2P43308 183 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 ATP6V0D1P61421 351 aa21.68■■□□□ 1.06
CPSF1-202ENST00000527827 TBL3Q12788 808 aaKnown RBP21.68■■□□□ 1.06
CPSF1-202ENST00000527827 ILF2Q12905 390 aaKnown RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms