RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 BTN3A3O00478 584 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 KIAA0355O15063 1070 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 HRO43593 1189 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ATG13O75143 517 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ALOX5P09917 674 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 PABPC1P11940 636 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 PRG2P13727 222 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TYRP1P17643 537 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ACRV1P26436 265 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 HTR1EP28566 365 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 HOXC8P31273 242 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 HMGCLP35914 325 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 NAA10P41227 235 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 CLK3P49761 638 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 PGDP52209 483 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 EMP3P54852 163 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ENPEPQ07075 957 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 DSC1Q08554 894 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LRRC32Q14392 662 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 DUOXA1Q1HG43 343 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 C22orf39Q6P5X5 142 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 MACC1Q6ZN28 852 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 GALNT12Q8IXK2 581 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 OR8H3Q8N146 312 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TEX19Q8NA77 164 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ZNF548Q8NEK5 533 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 B3GNT7Q8NFL0 401 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SUSD6Q92537 303 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ZUFSPQ96AP4 578 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 MAELQ96JY0 434 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TOX2Q96NM4 488 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 CUEDC1Q9NWM3 386 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 CA14Q9ULX7 337 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 PCDHB1Q9Y5F3 818 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 INSL5Q9Y5Q6 135 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 IRAK3Q9Y616 596 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LOC102723532A0A0G2JNH3 316 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 MROH6A6NGR9 719 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 POM121CA8CG34 1229 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ANHXE9PGG2 379 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TLR4O00206 839 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LEFTY2O00292 366 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 NDUFS4O43181 175 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 NARSO43776 548 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 PRAMEF10O60809 474 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ZNF623O75123 536 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ERN1O75460 977 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SCO1O75880 301 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 EOMESO95936 686 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SLC35G4P0C7Q5 338 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 GKN3PP0CG01 181 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 FUT1P19526 365 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 FPR1P21462 350 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TIE1P35590 1138 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SCNN1AP37088 669 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 MAGEA12P43365 314 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SOX2P48431 317 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TUBA4AP68366 448 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SRSF5Q13243 272 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TDGQ13569 410 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ATXN7L3Q14CW9 347 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 QPRTQ15274 297 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 MARCH9Q86YJ5 346 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LRRC49Q8IUZ0 686 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 KBTBD8Q8NFY9 601 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 OR5M3Q8NGP4 307 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ZNF461Q8TAF7 563 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 RLN3Q8WXF3 142 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 GCDHQ92947 438 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LRR1Q96L50 414 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LRRC3BQ96PB8 259 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 EMILIN2Q9BXX0 1053 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ACTL8Q9H568 366 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 DNMT3BQ9UBC3 853 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 MYO18BQ8IUG5 2567 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 LOC105369274A0A096LPK9 316 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TRBV4-1A0A0J9YWV2 114 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 A0A1W2PRG6 482 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SAGE2PA6NJ88 616 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 FAM25EA8MYX2 175 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ENTPD6O75354 484 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 GATBO75879 557 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 CCNDBP1O95273 360 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 IFNA16P05015 189 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SYPP08247 313 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 FBXO45P0C2W1 286 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 IL9P15248 144 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ZNF12P17014 697 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 CD40LGP29965 261 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 CLCN7P51798 805 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ELAVL2Q12926 359 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 GINS1Q14691 196 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 SYPL1Q16563 259 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 DUSP7Q16829 419 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 PDCD4Q53EL6 469 aaKnown RBP4.76□□□□□ -1.65
CCDC39-204ENST00000476379 TMEM107Q6UX40 140 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 BEND5Q7L4P6 421 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 COMMD6Q7Z4G1 85 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 ANKRD13BQ86YJ7 626 aa4.76□□□□□ -1.65
CCDC39-204ENST00000476379 RAB43Q86YS6 212 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms