RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 GSKIPQ9P0R6 139 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 PPP4R1LQ9P1A2 415 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 ZNF282Q9UDV7 671 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC23A1Q9UHI7 598 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 LEF1Q9UJU2 399 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 ZDHHC8Q9ULC8 765 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CDY1Q9Y6F8 540 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CAPN6Q9Y6Q1 641 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 KIF1BO60333 1816 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 ERCC6L2Q5T890 1561 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 DAPK1P53355 1430 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 ELOA3CA0A087WX78 387 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 TBC1D3KA0A087X1G2 549 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 TRBV7-9A0A0J9YWB2 115 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 TRBV2A0A0J9YWF9 115 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 A0A1W2PRX2 142 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 MGAT4DA6NG13 374 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 ELOA3DA6NLF2 546 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 FIGNL2A6NMB9 653 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SHISA8B8ZZ34 492 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 KLRF2D3W0D1 207 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 E7EWF7 191 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 RNF225M0QZC1 329 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 SIGLEC6O43699 453 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CHP2O43745 196 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 LIASO43766 372 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC28A2O43868 658 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CUTAO60888 179 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC22A5O76082 557 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 IFNA10P01566 189 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 TCRBP04435 133 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CD5P06127 495 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 EEF1B2P24534 225 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 ARR3P36575 388 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 MTNR1AP48039 350 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SERPINH1P50454 418 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 RPS16P62249 146 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC7A9P82251 487 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 GTF2BQ00403 316 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 NAAAQ02083 359 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 GUK1Q16774 197 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.32□□□□□ -1.88
UBR3-208ENST00000474426 FAM214AQ32MH5 1076 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 C14orf28Q4W4Y0 310 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 MBNL2Q5VZF2 373 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 ZNF546Q86UE3 836 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 NLGN4XQ8N0W4 816 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 EXD3Q8N9H8 876 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 FAM47BQ8NA70 645 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC17A8Q8NDX2 589 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 BPIFB1Q8TDL5 484 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 TRUB1Q8WWH5 349 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 RAB40AQ8WXH6 277 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 NRGNQ92686 78 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC38A2Q96QD8 506 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 SLC22A12Q96S37 553 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CD180Q99467 661 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 VAT1Q99536 393 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 KLF6Q99612 283 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 SPSB2Q99619 263 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 NICN1Q9BSH3 213 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 STRADBQ9C0K7 418 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 OR10A5Q9H207 317 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CHRDQ9H2X0 955 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 ZNF768Q9H5H4 540 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 WDR54Q9H977 334 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 C6orf50Q9HD87 102 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 TMEM248Q9NWD8 314 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 DPP3Q9NY33 737 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 ERAP1Q9NZ08 941 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 PLA2G3Q9NZ20 509 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 KLHL8Q9P2G9 620 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 KLQ9UEF7 1012 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 CA5BQ9Y2D0 317 aa3.32□□□□□ -1.88
UBR3-208ENST00000474426 YBX2Q9Y2T7 364 aaKnown RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 UBE2J1Q9Y385 318 aaPredicted RBP3.32□□□□□ -1.88
UBR3-208ENST00000474426 MEIS3P2A8K0S8 358 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 SPATA31C2B4DYI2 1134 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 H3BMM5 538 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 UPK3AO75631 287 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 ZWINTO95229 277 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 SLC16A8O95907 504 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 EFEMP2O95967 443 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 RPLP2P05387 115 aaKnown RBP3.31□□□□□ -1.88
UBR3-208ENST00000474426 SNHG28P0DPA3 235 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 GABRB1P18505 474 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 TIMP3P35625 211 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 MRPL19P49406 292 aaKnown RBP3.31□□□□□ -1.88
UBR3-208ENST00000474426 CDH15P55291 814 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 BNIP2Q12982 314 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 EPHA10Q5JZY3 1008 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 MAP1SQ66K74 1059 aaPredicted RBP3.31□□□□□ -1.88
UBR3-208ENST00000474426 SYCE2Q6PIF2 218 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 ATRAIDQ6UW56 229 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 GPBP1Q86WP2 473 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 ZNF280BQ86YH2 543 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 SPAG16Q8N0X2 631 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 ZNF276Q8N554 614 aa3.31□□□□□ -1.88
UBR3-208ENST00000474426 MRPL50Q8N5N7 158 aaKnown RBP3.31□□□□□ -1.88
UBR3-208ENST00000474426 PDPRQ8NCN5 879 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms