RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 WACQ9BTA9 647 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 MS4A7Q9GZW8 240 aaPredicted RBP12.53□□□□□ -0.4
NUP54-201ENST00000264883 SAV1Q9H4B6 383 aaPredicted RBP12.53□□□□□ -0.4
NUP54-201ENST00000264883 STARD7Q9NQZ5 370 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 SDHAF2Q9NX18 166 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 COPS3Q9UNS2 423 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 BAIAP2Q9UQB8 552 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 RAI2Q9Y5P3 530 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 CHD5Q8TDI0 1954 aa12.53□□□□□ -0.4
NUP54-201ENST00000264883 SGK494L7N484 410 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 CBX4O00257 560 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 ADAMDEC1O15204 470 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 TAPBPO15533 448 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 SUV39H1O43463 412 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 SRCP12931 536 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 CYP4F8P98187 520 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 PUDPQ08623 228 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 BCL2L15Q5TBC7 163 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 PTRHD1Q6GMV3 140 aaKnown RBP12.52□□□□□ -0.4
NUP54-201ENST00000264883 FRMPD2BQ6IN97 320 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 RETSATQ6NUM9 610 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 BHLHB9Q6PI77 547 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 LRFN4Q6PJG9 635 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 METAP1DQ6UB28 335 aaPredicted RBP12.52□□□□□ -0.4
NUP54-201ENST00000264883 MIB1Q86YT6 1006 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 NELL1Q92832 810 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 WBP1Q96G27 269 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 PDXPQ96GD0 296 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 EGFL8Q99944 293 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 NSUN3Q9H649 340 aaKnown RBP12.52□□□□□ -0.4
NUP54-201ENST00000264883 LDAHQ9H6V9 325 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 FANCFQ9NPI8 374 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 KCMF1Q9P0J7 381 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 KIF25Q9UIL4 384 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 PADI2Q9Y2J8 665 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 MRPS7Q9Y2R9 242 aaKnown RBP12.52□□□□□ -0.4
NUP54-201ENST00000264883 KLF2Q9Y5W3 355 aaPredicted RBP12.52□□□□□ -0.4
NUP54-201ENST00000264883 STON1Q9Y6Q2 735 aa12.52□□□□□ -0.4
NUP54-201ENST00000264883 HRO43593 1189 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 HPGDSO60760 199 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 HBQ1P09105 142 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 POU2F1P14859 743 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 PTX3P26022 381 aaPredicted RBP12.52□□□□□ -0.41
NUP54-201ENST00000264883 FAM189BP81408 668 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 RIPPLY1Q0D2K3 151 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 MLLT11Q13015 90 aaPredicted RBP12.52□□□□□ -0.41
NUP54-201ENST00000264883 GPR68Q15743 365 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 MICAQ29983 383 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 GGTA1PQ4G0N0 100 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 ZNF730Q6ZMV8 503 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 BBS7Q8IWZ6 715 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 SPPL2AQ8TCT8 520 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 TMEM203Q969S6 136 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 CIDECQ96AQ7 238 aaPredicted RBP12.52□□□□□ -0.41
NUP54-201ENST00000264883 NXPE2Q96DL1 559 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 KCTD7Q96MP8 289 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 NELL2Q99435 816 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 REG4Q9BYZ8 158 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 SLC35C2Q9NQQ7 365 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 SLCO1C1Q9NYB5 712 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 RAB23Q9ULC3 237 aa12.52□□□□□ -0.41
NUP54-201ENST00000264883 TUBAL3A6NHL2 446 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 PRMT3O60678 531 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 CLDN11O75508 207 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 DHFRP00374 187 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 FCER2P06734 321 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 OR4Q2P0C623 313 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 OR56A5P0C7T3 313 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 CDH12P55289 794 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 C1DQ13901 141 aaKnown RBP12.51□□□□□ -0.41
NUP54-201ENST00000264883 LRRC32Q14392 662 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 DUSP6Q16828 381 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 EXOC3L2Q2M3D2 409 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 WDR48Q8TAF3 677 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 HHIPQ96QV1 700 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 KATNB1Q9BVA0 655 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 SERTM1A2A2V5 107 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 MFSD2BA6NFX1 497 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 ENTPD6O75354 484 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 CLDN9O95484 217 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 HLA-EP13747 358 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 NNMTP40261 264 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 RGRP47804 291 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 CAV3P56539 151 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 ERVFC1P60507 584 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 S100A12P80511 92 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 SPIBQ01892 262 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 C2orf80Q0P641 193 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 SCRN3Q0VDG4 424 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 FOXD4Q12950 439 aaPredicted RBP12.51□□□□□ -0.41
NUP54-201ENST00000264883 VEZF1Q14119 521 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 TAF12Q16514 161 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 SPDYE7PQ495Y7 208 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 TSEN54Q7Z6J9 526 aaKnown RBP12.51□□□□□ -0.41
NUP54-201ENST00000264883 METTL3Q86U44 580 aaKnown RBP12.51□□□□□ -0.41
NUP54-201ENST00000264883 NANOGP1Q8N7R0 232 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 OR9Q2Q8NGE9 314 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 OR4C15Q8NGM1 316 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 TMEM163Q8TC26 289 aa12.51□□□□□ -0.41
NUP54-201ENST00000264883 CMTM7Q96FZ5 175 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms