RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SPAG16Q8N0X2 631 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 FAM47BQ8NA70 645 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 OR10A6Q8NH74 314 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NPLOC4Q8TAT6 608 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 FCGR1BQ92637 280 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 IP6K3Q96PC2 410 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TTYH2Q9BSA4 534 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 HINT2Q9BX68 163 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZBTB26Q9HCK0 441 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF701Q9NV72 531 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SNX10Q9Y5X0 201 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ADGRB1O14514 1584 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 KCPQ6ZWJ8 1503 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 A6NHS1 94 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 YJEFN3A6XGL0 299 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 CXCR6O00574 342 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NPHS1O60500 1241 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 OR4F21O95013 312 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 STK19P49842 368 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 VASPP50552 380 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 DAP3P51398 398 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NPRL3Q12980 569 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GRB7Q14451 532 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PCBP2Q15366 365 aaKnown RBP eCLIP5.89□□□□□ -1.471e-9■■■■■ 28.3
SCN1A-217ENST00000637988 SLC14A2Q15849 920 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NTRK3Q16288 839 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 KBTBD2Q8IY47 623 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 C12orf76Q8N812 135 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PRELID2Q8N945 189 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 STOML3Q8TAV4 291 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZDHHC16Q969W1 377 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NTAN1Q96AB6 310 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RCN3Q96D15 328 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RRNAD1Q96FB5 475 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PGM2Q96G03 612 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF559Q9BR84 538 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 HAO2Q9NYQ3 351 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF850A8MQ14 1090 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ARL6IP5O75915 188 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GPIP06744 558 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PNMTP11086 282 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 POU2F1P14859 743 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GLDCP23378 1020 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 YAP1P46937 504 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 EMP2P54851 167 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ABHD18Q0P651 414 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RAB11BQ15907 218 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 FBXL22Q6P050 247 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ARHGAP22Q7Z5H3 698 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PCDH19Q8TAB3 1148 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 FKBP10Q96AY3 582 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MOCOSQ96EN8 888 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PCDHB18PQ96TA0 734 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ACSS3Q9H6R3 686 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MYNNQ9NPC7 610 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM9BQ9NQ34 198 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NWD2Q9ULI1 1742 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ANKRD33BA6NCL7 494 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NKX6-3A6NJ46 265 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ADORA3P0DMS8 318 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 XRCC1P18887 633 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TSFMP43897 325 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SLC6A8P48029 635 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SLC10A6Q3KNW5 377 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GPRC6AQ5T6X5 926 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 B3GNT6Q6ZMB0 384 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RHBDF1Q96CC6 855 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PGAP3Q96FM1 320 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 THOC3Q96J01 351 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NUDT9Q9BW91 350 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF350Q9GZX5 532 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RLIMQ9NVW2 624 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RNF215Q9Y6U7 377 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TTC3P53804 2025 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RP1L1Q8IWN7 2480 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MANBAO00462 879 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MTX2O75431 263 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 CTHP32929 405 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RAB8AP61006 207 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RHEBQ15382 184 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 EML3Q32P44 896 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 EEF1A1P5Q5VTE0 462 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SLX4IPQ5VYV7 408 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC6AQ6EIG7 209 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 VHLLQ6RSH7 139 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 FRMD7Q6ZUT3 714 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GNPDA2Q8TDQ7 276 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MND1Q9BWT6 205 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NANSQ9NR45 359 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MALT1Q9UDY8 824 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF223Q9UK11 482 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 KIR2DS5A0A0G2JLQ3 304 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 A0A0G2JNG1 304 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KIR2DS3K7RE56 304 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SURF4O15260 269 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KLRC4O43908 158 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LCKP06239 509 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 C8orf89P0DMQ9 161 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 UBL4AP11441 157 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 NCK1P16333 377 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms