RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZNF334Q9HCZ1 680 aaPredicted RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 STARD7Q9NQZ5 370 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 CCDC59Q9P031 241 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 LRFN2Q9ULH4 789 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 PADI2Q9Y2J8 665 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 HCN4Q9Y3Q4 1203 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 OR51B4Q9Y5P0 310 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ALPK2Q86TB3 2170 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 CFAP54Q96N23 3096 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 M0R3H8 397 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SGTAO43765 313 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 RECKO95980 971 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ATP1B2P14415 290 aaPredicted RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 IL1RNP18510 177 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 PSMA1P25786 263 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 SERPINA4P29622 427 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 RPS25P62851 125 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 TCEA2Q15560 299 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SPOUT1Q5T280 376 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 HSD11B1LQ7Z5J1 315 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 DEFB128Q7Z7B8 93 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 LHFPL3Q86UP9 236 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 PDZD3Q86UT5 571 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 COMTD1Q86VU5 262 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 L3MBTL4Q8NA19 623 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 OR4D11Q8NGI4 311 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 OR5D16Q8NGK9 328 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SNAPC3Q92966 411 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ALG14Q96F25 216 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 TSSK6Q9BXA6 273 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SRRQ9GZT4 340 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 MIXL1Q9H2W2 232 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 KCNK12Q9HB15 430 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ZDHHC4Q9NPG8 344 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 NDRG2Q9UN36 371 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 RUVBL1Q9Y265 456 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 LTBP2Q14767 1821 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 TRBV5-4A0A0C4DH59 114 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 CCL5P13501 91 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ANXA8P13928 327 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 CRYBB2P43320 205 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ZNF91Q05481 1191 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SLBPQ14493 270 aaKnown RBP eCLIP11.76□□□□□ -0.53
LDLR-205ENST00000557933 NDUFA5Q16718 116 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SMU1Q2TAY7 513 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 RETSATQ6NUM9 610 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 IL20RBQ6UXL0 311 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SLC7A6Q92536 515 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 WRAP53Q9BUR4 548 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 C2orf49Q9BVC5 232 aaPredicted RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 RIOK2Q9BVS4 552 aaKnown RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 HDHD5Q9BXW7 423 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 ANKRA2Q9H9E1 313 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 TBC1D17Q9HA65 648 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 STOX2Q9P2F5 926 aaPredicted RBP11.76□□□□□ -0.53
LDLR-205ENST00000557933 SNX7Q9UNH6 387 aa11.76□□□□□ -0.53
LDLR-205ENST00000557933 SPTBP11277 2137 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 HELZP42694 1942 aaKnown RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 C2orf92A0A1B0GVN3 265 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 FAM172BPA6NC97 362 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 GLOD5A6NK44 160 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 B4DXG7 233 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 MYL12BO14950 172 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PRKYO43930 277 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 TNFRSF21O75509 655 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PRKRAO75569 313 aaKnown RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 IL3P08700 152 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 ETV5P41161 510 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 ETV1P50549 477 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PRKAG1P54619 331 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 VEZF1Q14119 521 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 GPAT3Q53EU6 434 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 SDE2Q6IQ49 451 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 TUBA3EQ6PEY2 450 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 CEACAM20Q6UY09 585 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 GPR155Q7Z3F1 870 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 ENKURQ8TC29 256 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 ADAMTS19Q8TE59 1207 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 CYB5D2Q8WUJ1 264 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 JPH3Q8WXH2 748 aaPredicted RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 PIP5K1AQ99755 562 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 MACROD1Q9BQ69 325 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 KLF16Q9BXK1 252 aaPredicted RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 RDH14Q9HBH5 336 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 FKBP14Q9NWM8 211 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 UCKL1Q9NWZ5 548 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 CFAP97Q9P2B7 532 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 SCN8AQ9UQD0 1980 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PLXND1Q9Y4D7 1925 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 LAMA1P25391 3075 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 C12orf71A8MTZ7 269 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 RGS13O14921 159 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PPM1DO15297 605 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 HRO43593 1189 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 SYPP08247 313 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PCGF2P35227 344 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 TUFMP49411 452 aaKnown RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 RORCP51449 518 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 AP1S1P61966 158 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PSPHP78330 225 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms