RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ATAD3AQ9NVI7 634 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TVP23BQ9NYZ1 205 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 BLOC1S6Q9UL45 172 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 MKLN1Q9UL63 735 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CDH7Q9ULB5 785 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TMED5Q9Y3A6 229 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CORINQ9Y5Q5 1042 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 KCNE3Q9Y6H6 103 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TRBV4-1A0A0J9YWV2 114 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 SLC35F4A4IF30 521 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 PRAMEF25A6NGN4 478 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CCDC85CA6NKD9 419 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 LRRTM2O43300 516 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 LILRB5O75023 590 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 BCAS1O75363 584 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 GCM2O75603 506 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 SERPINI2O75830 405 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 BMP10O95393 424 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 FGF19O95750 216 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 GPX2P18283 190 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 PTX3P26022 381 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CALRP27797 417 aaKnown RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 RYKP34925 604 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 GRK3P35626 688 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 KRT20P35900 424 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CRYBA2P53672 197 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 C21orf59P57076 290 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 HPCAP84074 193 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 NR1D2Q14995 579 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 MLF2Q15773 248 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 DPY19L1Q2PZI1 675 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM196Q5HYL7 178 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 C6orf132Q5T0Z8 1188 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 NDUFAF5Q5TEU4 345 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 AGBL4Q5VU57 503 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 KHDRBS2Q5VWX1 349 aaKnown RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 KLHL35Q6PF15 583 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CBLL1Q75N03 491 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CALHM3Q86XJ0 350 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 APLFQ8IW19 511 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 PRSS58Q8IYP2 241 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 FAM9CQ8IZT9 166 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 SLC15A4Q8N697 577 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF557Q8N988 423 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 PAPD5Q8NDF8 572 aaKnown RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 GAB3Q8WWW8 586 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 SMPDL3AQ92484 453 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TM4SF18Q96CE8 201 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CXorf40BQ96DE9 158 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 COPS4Q9BT78 406 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 DOHHQ9BU89 302 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TM9SF3Q9HD45 589 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 SEMA3GQ9NS98 782 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 AHSPQ9NZD4 102 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 NDUFAF4Q9P032 175 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 DKK3Q9UBP4 350 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF282Q9UDV7 671 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-215ENST00000552823 TBC1D29Q9UFV1 150 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 SLC13A4Q9UKG4 626 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 GPR52Q9Y2T5 361 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 ATG4BQ9Y4P1 393 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 ARID1AO14497 2285 aa5.32□□□□□ -1.56
LIMA1-215ENST00000552823 CACNB4O00305 520 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 HAT1O14929 419 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 HOXC11O43248 304 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 RGS10O43665 173 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 GPR37L1O60883 481 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 RETP07949 1114 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CD36P16671 472 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ACADLP28330 430 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ST13P50502 369 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 BMXP51813 675 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 KCNJ10P78508 379 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 DAB2P98082 770 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 DUSP2Q05923 314 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 EPS8Q12929 822 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 NFATC3Q12968 1075 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TARDBPQ13148 414 aaKnown RBP eCLIP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 GBX1Q14549 363 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 GGTA1PQ4G0N0 100 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PRRT3Q5FWE3 981 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 C1orf53Q5VUE5 145 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PTCHD4Q6ZW05 846 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF605Q86T29 641 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PDZD3Q86UT5 571 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LACC1Q8IV20 430 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CCDC71Q8IV32 467 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ERI1Q8IV48 349 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 KLHDC8AQ8IYD2 350 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 AMER2Q8N7J2 671 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZFP41Q8N8Y5 198 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SLC38A5Q8WUX1 472 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TEFMQ96QE5 360 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ALPK1Q96QP1 1244 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 APOL4Q9BPW4 351 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TTTY10Q9BZA0 68 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OR51I1Q9H343 314 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SYNPO2LQ9H987 977 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SFXN1Q9H9B4 322 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TOR4AQ9NXH8 423 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms