RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZSWIM3Q96MP5 696 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 FAM83CQ9BQN1 747 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 CNPPD1Q9BV87 410 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 ZBP1Q9H171 429 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 MARCH7Q9H992 704 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 CPNE5Q9HCH3 593 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 EXOSC4Q9NPD3 245 aaKnown RBP7.15□□□□□ -1.27
LIMA1-213ENST00000552720 TSC22D4Q9Y3Q8 395 aa7.15□□□□□ -1.27
LIMA1-213ENST00000552720 WASHC1A8K0Z3 465 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 PSMD11O00231 422 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 HAT1O14929 419 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 TPST2O60704 377 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 B4GALT2O60909 372 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 FGF18O76093 207 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 IFNW1P05000 195 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 ITGB8P26012 769 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 HMGA2P52926 109 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 CDC42P60953 191 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 PCDH1Q08174 1060 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 RBBP4Q09028 425 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 COL9A2Q14055 689 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-213ENST00000552720 SF3B4Q15427 424 aaKnown RBP eCLIP7.14□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF805Q5CZA5 627 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 CNKSR3Q6P9H4 555 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 LILRA6Q6PI73 481 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 NXPE4Q6UWF7 544 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 WASH2PQ6VEQ5 465 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 FAM83HQ6ZRV2 1179 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-213ENST00000552720 COMTD1Q86VU5 262 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 MEX3DQ86XN8 651 aaKnown RBP7.14□□□□□ -1.27
LIMA1-213ENST00000552720 SLC38A5Q8WUX1 472 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 APOBEC4Q8WW27 367 aaKnown RBP7.14□□□□□ -1.27
LIMA1-213ENST00000552720 CXorf40BQ96DE9 158 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 OPALINQ96PE5 141 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 SGPP1Q9BX95 441 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 ANKHQ9HCJ1 492 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 MYNNQ9NPC7 610 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 ZDHHC4Q9NPG8 344 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 MIEF1Q9NQG6 463 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 FBXL12Q9NXK8 326 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 EHD3Q9NZN3 535 aa7.14□□□□□ -1.27
LIMA1-213ENST00000552720 A0A0G2JN53 185 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ISPDA4D126 451 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ANKDD1BA6NHY2 528 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 HIDE1A8MVS5 230 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 FOXE1O00358 373 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 PLPP1O14494 284 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 AP3D1O14617 1153 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 LRRTM2O43300 516 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CXCL14O95715 111 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ACRP10323 421 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ITGA2P17301 1181 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 LAG3P18627 525 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 RPS19P39019 145 aaKnown RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF45Q02386 682 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 PRKCDQ05655 676 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CNTN1Q12860 1018 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 HSPB3Q12988 150 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 NOGQ13253 232 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 MADCAM1Q13477 382 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF630Q2M218 657 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TCEAL5Q5H9L2 206 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 DEF8Q6ZN54 512 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF367Q7RTV3 350 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 AKAP14Q86UN6 197 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 C12orf40Q86WS4 652 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 IQCF1Q8N6M8 205 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SLAIN1Q8ND83 568 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 OR5AR1Q8NGP9 310 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 OR9A1PQ8NGU1 263 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ING5Q8WYH8 240 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 REPS1Q96D71 796 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TXNDC15Q96J42 360 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SLC6A18Q96N87 628 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 EFCAB11Q9BUY7 163 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 BARHL1Q9BZE3 327 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 NUAK2Q9H093 628 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 RERGLQ9H628 205 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 HHATLQ9HCP6 504 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TDP1Q9NUW8 608 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CCDC59Q9P031 241 aaKnown RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 REV1Q9UBZ9 1251 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ANGPT4Q9Y264 503 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ATP11BQ9Y2G3 1177 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 LINC00854A0A1B0GVQ3 168 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 FEZF1A0PJY2 475 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TSPAN11A1L157 253 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SMIM30A4D0T7 59 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 SAGE2PA6NJ88 616 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 A6NL46 340 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 H3BN98 237 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 TLR4O00206 839 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CCRL2O00421 344 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 PPM1DO15297 605 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 CSO75390 466 aaKnown RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 MED26O95402 600 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 STATHP02808 62 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 RHCEP18577 417 aa7.13□□□□□ -1.27
LIMA1-213ENST00000552720 AZGP1P25311 298 aaKnown RBP7.13□□□□□ -1.27
LIMA1-213ENST00000552720 ELAVL4P26378 380 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms