RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 MS4A12Q9NXJ0 267 aa12.53□□□□□ -0.4
LDLR-203ENST00000535915 C5AR2Q9P296 337 aa12.53□□□□□ -0.4
LDLR-203ENST00000535915 CKAP5Q14008 2032 aa12.53□□□□□ -0.4
LDLR-203ENST00000535915 FEZF1A0PJY2 475 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 PDPK1O15530 556 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 NFATC1O95644 943 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 TBX6O95947 436 aaPredicted RBP12.52□□□□□ -0.4
LDLR-203ENST00000535915 GABRB1P18505 474 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 HMGA2P52926 109 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 CDC42P60953 191 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 IFITM3Q01628 133 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 HORMAD2Q8N7B1 307 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 ITPKCQ96DU7 683 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 TM7SF3Q9NS93 570 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 ENOPH1Q9UHY7 261 aa12.52□□□□□ -0.4
LDLR-203ENST00000535915 GASTP01350 101 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 PCCBP05166 539 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 CBLP22681 906 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 PSMB5P28074 263 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 P2RY2P41231 377 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 TUBA1BP68363 451 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 HSPB3Q12988 150 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 RPA4Q13156 261 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 CAMK1Q14012 370 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 HEPACAMQ14CZ8 416 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 TUBA1AQ71U36 451 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 NLGN4XQ8N0W4 816 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 SLC38A5Q8WUX1 472 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 OR5P2Q8WZ92 322 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 TM4SF18Q96CE8 201 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 NEURL3Q96EH8 262 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 PDXPQ96GD0 296 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 COL21A1Q96P44 957 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 MS4A8Q9BY19 250 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 ZNF717Q9BY31 904 aaPredicted RBP12.52□□□□□ -0.41
LDLR-203ENST00000535915 RHBGQ9H310 441 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 DSN1Q9H410 356 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 NMNAT1Q9HAN9 279 aaPredicted RBP12.52□□□□□ -0.41
LDLR-203ENST00000535915 SLC6A14Q9UN76 642 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 FAM227AF5H4B4 570 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 CAPN5O15484 640 aaPredicted RBP12.52□□□□□ -0.41
LDLR-203ENST00000535915 SEMA3DO95025 777 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 RECKO95980 971 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 ADORA3P0DMS8 318 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 CXCR2P25025 360 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 POU1F1P28069 291 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 BSGP35613 385 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 DGKEP52429 567 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 TEKQ02763 1124 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 PUM1Q14671 1186 aaKnown RBP eCLIP12.52□□□□□ -0.41
LDLR-203ENST00000535915 BCL2A1Q16548 175 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 SPDYE7PQ495Y7 208 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 SAXO2Q658L1 398 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 KLHL17Q6TDP4 642 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 LRRTM4Q86VH4 590 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 CACUL1Q86Y37 369 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 C12orf76Q8N812 135 aaPredicted RBP12.52□□□□□ -0.41
LDLR-203ENST00000535915 B3GNT7Q8NFL0 401 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 OR5K2Q8NHB8 316 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 SP7Q8TDD2 431 aaPredicted RBP12.52□□□□□ -0.41
LDLR-203ENST00000535915 SUSD6Q92537 303 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 SMG7Q92540 1137 aaKnown RBP12.52□□□□□ -0.41
LDLR-203ENST00000535915 RAB8BQ92930 207 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 COX14Q96I36 57 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 MAPKAP1Q9BPZ7 522 aa12.52□□□□□ -0.41
LDLR-203ENST00000535915 C2orf16Q68DN1 1984 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 LOC100506127A0A0U1RQW1 187 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 KRBA1A5PL33 1030 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 H7BY64 318 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 PTHP01270 115 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 RPN2P04844 631 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 HSMCR30P0CW71 290 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 CCR8P51685 355 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 LIM2P55344 173 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 CNTN1Q12860 1018 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 EIF4HQ15056 248 aaKnown RBP12.51□□□□□ -0.41
LDLR-203ENST00000535915 GAB4Q2WGN9 574 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 C6orf183Q5T699 404 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 SLC46A3Q7Z3Q1 461 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 EXOSC8Q96B26 276 aaKnown RBP12.51□□□□□ -0.41
LDLR-203ENST00000535915 TMEM19Q96HH6 336 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 DACH2Q96NX9 599 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 PRAP1Q96NZ9 151 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 PSD2Q9BQI7 771 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 LGR4Q9BXB1 951 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 TMEM245Q9H330 911 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 PELI2Q9HAT8 420 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 TBC1D3BA6NDS4 549 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 ANTXRLA6NF34 631 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 C1QTNF3-AMACRE9PGA6 284 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 NDUFB5O43674 189 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 RPLP0P05388 317 aaKnown RBP12.51□□□□□ -0.41
LDLR-203ENST00000535915 DBTP11182 482 aaKnown RBP12.51□□□□□ -0.41
LDLR-203ENST00000535915 CHMP24386 653 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 UGT2B10P36537 528 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 ZNF404Q494X3 552 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 COLEC12Q5KU26 742 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 PNCKQ6P2M8 343 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 PTCHD4Q6ZW05 846 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 USP43Q70EL4 1123 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms