RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZNF226Q9NYT6 803 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 NFKBIL1Q9UBC1 381 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 CLEC2DQ9UHP7 191 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 CNTN1Q12860 1018 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 SCARB2Q14108 478 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 VEZF1Q14119 521 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 TCEA2Q15560 299 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 ZC3H12BQ5HYM0 836 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 ANXA8L1Q5VT79 327 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 NXPE4Q6UWF7 544 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 NANOGNBQ7Z5D8 188 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 LRRC56Q8IYG6 542 aaPredicted RBP15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF557Q8N988 423 aaPredicted RBP15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 SCAIQ8N9R8 606 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 OR8D1Q8WZ84 308 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 SMG7Q92540 1137 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 KLK6Q92876 244 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF566Q969W8 418 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 DOHHQ9BU89 302 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 TAC3Q9UHF0 121 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 LYVE1Q9Y5Y7 322 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 PRR23AA6NEV1 266 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 ALOX5P09917 674 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 GJA8P48165 433 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 IL18R1Q13478 541 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 BCL7AQ4VC05 210 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 FAM78AQ5JUQ0 283 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 C11orf96Q7Z7L8 435 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 FAM20CQ8IXL6 584 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 FBLIM1Q8WUP2 373 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 UCN3Q969E3 161 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 SGPP1Q9BX95 441 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 SNTG1Q9NSN8 517 aa15.75■□□□□ 0.11
CCDC88B-210ENST00000494566 LINC01553A4QN01 128 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 CARNS1A5YM72 827 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 LOC110117498-PIK3R3F6TDL0 507 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 RNASET2O00584 256 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 SH3BP5O60239 455 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PAPLNO95428 1278 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 FGF19O95750 216 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ADH1CP00326 375 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 CSF2P04141 144 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 IRF3Q14653 427 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 HNRNPA1L2Q32P51 320 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PGBD3Q8N328 593 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 DNAJC22Q8N4W6 341 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF784Q8NCA9 323 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 SLC6A16Q9GZN6 736 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 DEC1Q9P2X7 70 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF282Q9UDV7 671 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PCDHGB1Q9Y5G3 927 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 SNX11Q9Y5W9 270 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 SLC9A3R1O14745 358 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ITGB7P26010 798 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PCGF2P35227 344 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 SELENOWP63302 87 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 IFITM2Q01629 132 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PRAMEF14Q5SWL7 426 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PRAMEF13Q5VWM6 474 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ETFBKMTQ8IXQ9 262 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 NRSN1Q8IZ57 195 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 OTUB2Q96DC9 234 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 LRIG1Q96JA1 1093 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 F2RL3Q96RI0 385 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 TTYH2Q9BSA4 534 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 MMP28Q9H239 520 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PSORS1C1Q9UIG5 152 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PRAMEF33A0A0G2JMD5 474 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 TBC1D3BA6NDS4 549 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 WASHC1A8K0Z3 465 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 KMOO15229 486 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PPM1DO15297 605 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PRAMEF10O60809 474 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 TNFRSF21O75509 655 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 RPLP0P05388 317 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 EPHX1P07099 455 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 GRK3P35626 688 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 CASP3P42574 277 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ELP6Q0PNE2 266 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 GAB4Q2WGN9 574 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 TMEM240Q5SV17 173 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 HIST2H2AA3Q6FI13 130 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 TNFAIP8L2Q6P589 184 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 TMIGD1Q6UXZ0 262 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 WASH2PQ6VEQ5 465 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 NRARPQ7Z6K4 114 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 EFCAB11Q9BUY7 163 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 MIEF1Q9NQG6 463 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 DYRK4Q9NR20 520 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 PLSCR3Q9NRY6 295 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 IFT52Q9Y366 437 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 HEATR5BQ9P2D3 2071 aa15.74■□□□□ 0.11
CCDC88B-210ENST00000494566 ACADLP28330 430 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 IL12RB1P42701 662 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 C21orf58P58505 322 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 GCNT6Q5T4J0 391 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 FAHD1Q6P587 224 aa15.73■□□□□ 0.11
CCDC88B-210ENST00000494566 IQCF1Q8N6M8 205 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms