RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SLC22A8Q8TCC7 542 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PHOSPHO2Q8TCD6 241 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MGARPQ8TDB4 240 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 DQX1Q8TE96 717 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 AFAP1L1Q8TED9 768 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PTPMT1Q8WUK0 201 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 IRGQQ8WZA9 623 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CASP10Q92851 521 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PEX13Q92968 403 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NSUN4Q96CB9 384 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 RBM18Q96H35 190 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NSMCE3Q96MG7 304 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 FAM20AQ96MK3 541 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TCEANC2Q96MN5 208 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TTC25Q96NG3 672 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF599Q96NL3 588 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 SERINC2Q96SA4 455 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CLEC7AQ9BXN2 247 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 FAM129AQ9BZQ8 928 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TRIM15Q9C019 465 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 LAT2Q9GZY6 243 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GFRA4Q9GZZ7 299 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 WNT5BQ9H1J7 359 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GBA3Q9H227 469 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ERVMER34-1Q9H9K5 563 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 XAB2Q9HCS7 855 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 A4GALTQ9NPC4 353 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 C12orf4Q9NQ89 552 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GKN1Q9NS71 199 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 FARSBQ9NSD9 589 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PLCXD1Q9NUJ7 323 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 BARHL2Q9NY43 387 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 EURLQ9NYK6 297 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 OR6C2Q9NZP2 312 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 HACD3Q9P035 362 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 B3GAT1Q9P2W7 334 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 C19orf25Q9UFG5 118 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CHORDC1Q9UHD1 332 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CIDEBQ9UHD4 219 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 IL17BQ9UHF5 180 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TBX21Q9UL17 535 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GRID1Q9ULK0 1009 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PCDHGB4Q9UN71 923 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NEUROG3Q9Y4Z2 214 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 RNF215Q9Y6U7 377 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 IGSF10Q6WRI0 2623 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 OTOFQ9HC10 1997 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NOTCH2Q04721 2471 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 UBR5O95071 2799 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 KALRNO60229 2985 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ELP1O95163 1332 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TICRRQ7Z2Z1 1910 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 NBEAQ8NFP9 2946 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SMG1Q96Q15 3661 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ZZEF1O43149 2961 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PCP4L1A6NKN8 68 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ERI2A8K979 691 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 A8MX80 341 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 H7C423 109 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 K7ENM7 598 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 WDR46O15213 610 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 RNF113AO15541 343 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CYTH3O43739 400 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 EXTL3O43909 919 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 TBX10O75333 385 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CREG1O75629 220 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 DFFBO76075 338 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 BEST1O76090 585 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 OR5F1O95221 314 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 NADKO95544 446 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ANP32DO95626 131 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ATP6V1G2O95670 118 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 OLFM2O95897 454 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 NPPAP01160 153 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 S100A6P06703 90 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 ABCB1P08183 1280 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 FRMD6-AS1P0C7T7 363 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PRKAR1AP10644 381 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 KRT13P13646 458 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 POU2F1P14859 743 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PFKFB1P16118 471 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PORP16435 677 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CDH3P22223 829 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 KRT20P35900 424 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 CBX5P45973 191 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 LIG4P49917 911 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SERPINB8P50452 374 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 MAP3K7CLP57077 242 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 KRTAP10-5P60370 271 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 AKAP17AQ02040 695 aaKnown RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 SULT2A1Q06520 285 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 IFFO1Q0D2I5 559 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 LRRC74AQ0VAA2 488 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PNRC1Q12796 327 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PRKG2Q13237 762 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 GPM6BQ13491 265 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 PCLAFQ15004 111 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 P2RY6Q15077 328 aa1.91□□□□□ -2.1
HMGB1-208ENST00000490788 BCL2A1Q16548 175 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms