RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KIAA1191Q96A73 305 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ANKRD9Q96BM1 317 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 KCNC2Q96PR1 638 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF559Q9BR84 538 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 TTYH2Q9BSA4 534 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 EFCAB11Q9BUY7 163 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 MS4A8Q9BY19 250 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 SACM1LQ9NTJ5 587 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 TRMT1Q9NXH9 659 aaKnown RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 KCNN3Q9UGI6 736 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 PTBP2Q9UKA9 531 aaKnown RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ATG4BQ9Y4P1 393 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 FAM215AQ9Y5M1 114 aa11.47□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF469Q96JG9 3925 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-204ENST00000489403 FIGNL2A6NMB9 653 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 EFCAB8A8MWE9 144 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 AQP7O14520 342 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 CCNT2O60583 730 aaKnown RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 ETHE1O95571 254 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 CELA3AP09093 270 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 TNNI3P19429 210 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 ENDOUP21128 410 aaKnown RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 HIST1H1TP22492 207 aaPredicted RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 ATP5A1P25705 553 aaKnown RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 MSH2P43246 934 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 TGM3Q08188 693 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 CBLBQ13191 982 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 LAPTM5Q13571 262 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 E2F2Q14209 437 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 HYAL4Q2M3T9 481 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 PAGE2BQ5JRK9 111 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 RTL6Q6ICC9 239 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 OPN5Q6U736 354 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 B3GNT6Q6ZMB0 384 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 FAM47EQ6ZV65 393 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 ACOT4Q8N9L9 421 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 OR5L2Q8NGL0 311 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 OR10Q1Q8NGQ4 319 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF473Q8WTR7 871 aaKnown RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 SGCZQ96LD1 299 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 GPR22Q99680 433 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 TBCDQ9BTW9 1192 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 ROGDIQ9GZN7 287 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 SEMA4BQ9NPR2 832 aaPredicted RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 TUBA8Q9NY65 449 aaPredicted RBP11.46□□□□□ -0.57
CPSF3-204ENST00000489403 CD274Q9NZQ7 290 aa11.46□□□□□ -0.57
CPSF3-204ENST00000489403 NCKAP5O14513 1909 aa11.46□□□□□ -0.58
CPSF3-204ENST00000489403 A0A0G2JNJ9 132 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ATP6AP2A0A1C7CYW4 349 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 FGF17O60258 216 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SUSD5O60279 629 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SH3BGRLO75368 114 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ATP6AP2O75787 350 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 KRT38O76015 456 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SCELO95171 688 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 TGFB1P01137 390 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 P04436 131 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 GLI4P10075 376 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CD1EP15812 388 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 STMN1P16949 149 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CPN2P22792 545 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SSTR1P30872 391 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 GMPRP36959 345 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 PIGAP37287 484 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CASP2P42575 452 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 RPL21P46778 160 aaKnown RBP11.45□□□□□ -0.58
CPSF3-204ENST00000489403 MAN2A2P49641 1150 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ATP6V0D1P61421 351 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 IRF8Q02556 426 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ASPHQ12797 758 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ILF2Q12905 390 aaKnown RBP11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CHIT1Q13231 466 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ZKSCAN8Q15776 578 aaPredicted RBP11.45□□□□□ -0.58
CPSF3-204ENST00000489403 TBCCQ15814 346 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 HIST2H2ACQ16777 129 aaPredicted RBP11.45□□□□□ -0.58
CPSF3-204ENST00000489403 MPEG1Q2M385 716 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 PIGGQ5H8A4 983 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CES4AQ5XG92 561 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 HIST2H2AA3Q6FI13 130 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ADGRD1Q6QNK2 874 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 LRRC70Q7Z2Q7 622 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 LIX1LQ8IVB5 337 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 C9orf40Q8IXQ3 194 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CLYBLQ8N0X4 340 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SRFBP1Q8NEF9 429 aaKnown RBP11.45□□□□□ -0.58
CPSF3-204ENST00000489403 NRGNQ92686 78 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 EXT2Q93063 718 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 TSPAN17Q96FV3 270 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 RBBP8Q99708 897 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 LDAHQ9H6V9 325 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SH2D2AQ9NP31 389 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 COPS7AQ9UBW8 275 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 Q9UFV3 132 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 RNF112Q9ULX5 631 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 SNX24Q9Y343 169 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 ARHGAP21Q5T5U3 1957 aa11.45□□□□□ -0.58
CPSF3-204ENST00000489403 CCDC188H7C350 402 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 SAP18O00422 153 aaKnown RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 WDR1O75083 606 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 NADKO95544 446 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms