RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 BAZ2AQ9UIF9 1905 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 H7C1Q1 480 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SCO1O75880 301 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 IGFBP1P08833 259 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SGPP2Q8IWX5 399 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 PHOSPHO1Q8TCT1 267 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SGCZQ96LD1 299 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 GJD2Q9UKL4 321 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZDHHC11BP0C7U3 371 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 PAN3Q58A45 887 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 EXOSC6Q5RKV6 272 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 HES5Q5TA89 166 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CST9LP1Q5W188 147 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC51AQ86UW1 340 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CNN2Q99439 309 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF416Q9BWM5 594 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ASCC3Q8N3C0 2202 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 RNF17Q9BXT8 1623 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ARVCFO00192 962 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SNRNP200O75643 2136 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM119Q4V9L6 283 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC22A25Q6T423 547 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZIM2Q9NZV7 527 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF207O43670 478 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZIC2O95409 532 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CHRM1P11229 460 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CASP6P55212 293 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 MAP4K3Q8IVH8 894 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CAMKVQ8NCB2 501 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 EMID1Q96A84 441 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 POLDIP3Q9BY77 421 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC38A1Q9H2H9 487 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM248Q9NWD8 314 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 UNC13BO14795 1591 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 DISP2A7MBM2 1401 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SOX1O00570 391 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ENPP3O14638 875 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ESR1P03372 595 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 JUNDP17535 347 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 METTL11BQ5VVY1 283 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM111BQ6SJ93 734 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF662Q6ZS27 426 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 GPC2Q8N158 579 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 DNAJC22Q8N4W6 341 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC6A17Q9H1V8 727 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 FMO6PO60774 539 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 KCTD20Q7Z5Y7 419 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CNTN6Q9UQ52 1028 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 FER1L4A9Z1Z3 1794 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TRBV2A0A0J9YWF9 115 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 CREB1P16220 341 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PHF19Q5T6S3 580 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TTLL10Q6ZVT0 673 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM58AQ8N1B3 248 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 OR6N2Q8NGY6 317 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 HERVK_113Q902F9 699 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TTTY10Q9BZA0 68 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 AGPAT2O15120 278 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RPS17P08708 135 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PDGFRLQ15198 375 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 FIBCD1Q8N539 461 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PAPD5Q8NDF8 572 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM14AQ9Y6G1 99 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ECI2O75521 394 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 DNAJB5O75953 348 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 METTL15P1P0C7V9 234 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PFKLP17858 780 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ANKRD13BQ86YJ7 626 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ZFPM1Q8IX07 1006 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 LRRN4Q8WUT4 740 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 DEC1Q9P2X7 70 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ERVK-7P63135 1459 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TOR1AO14656 332 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 SOX30O94993 753 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 POP4O95707 220 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RETP07949 1114 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PRKCZQ05513 592 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TARBP2Q15633 366 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PCK2Q16822 640 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 UPP1Q16831 310 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 BOLLQ8N9W6 283 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF514Q96K75 400 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 CDK15Q96Q40 435 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 INSIG1O15503 277 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 AMY2AP04746 511 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 CORO1AP31146 461 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 MMP14P50281 582 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM220Q6QAJ8 160 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC35C1Q96A29 364 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RPS10-NUDT3A0A1W2PQS6 291 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 AGAP14A8MT82 685 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RPS10P46783 165 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RPL7AP62424 266 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 SNTB2Q13425 540 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 FBXO48Q5FWF7 155 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TCTE3Q8IZS6 198 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PAQR8Q8TEZ7 354 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 SAT2Q96F10 170 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ABHD16BQ9H3Z7 469 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms