RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NFKBIDQ8NI38 313 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 RHBDD1Q8TEB9 315 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 PTERQ96BW5 349 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 OSBPL7Q9BZF2 842 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 XKR8Q9H6D3 395 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 IL21RQ9HBE5 538 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 STMN3Q9NZ72 180 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 KLHL21Q9UJP4 597 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 SLC35A3Q9Y2D2 325 aa13.04□□□□□ -0.32
LDLR-201ENST00000252444 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.04□□□□□ -0.32
LDLR-201ENST00000252444 RHCEP18577 417 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PEX19P40855 299 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ERFP50548 548 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 TRAM1Q15629 374 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 TAB1Q15750 504 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 C14orf28Q4W4Y0 310 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 COLEC12Q5KU26 742 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PRAMEF8Q5VWM4 474 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PRAMEF7Q5VXH5 474 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 SLC2A7Q6PXP3 512 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 C19orf47Q8N9M1 422 aaKnown RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 C19orf18Q8NEA5 215 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 GABRG3Q99928 467 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 COMMD4Q9H0A8 199 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 HCN4Q9Y3Q4 1203 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ACVR2AP27037 513 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PCGF2P35227 344 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 RAB15P59190 212 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 RNF165Q6ZSG1 346 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ZNF707Q96C28 371 aaPredicted RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 SEC14L4Q9UDX3 406 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 SLC5A10A0PJK1 596 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ZNF726A6NNF4 738 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 SAP18O00422 153 aaKnown RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 FANCGO15287 622 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 JUNP05412 331 aaKnown RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 LCN1P31025 176 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PLCXD2Q0VAA5 305 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 CPZQ66K79 652 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 NAPRTQ6XQN6 538 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 TECPR1Q7Z6L1 1165 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 OR7G1Q8NGA0 311 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 OR2AJ1Q8NGZ0 328 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 TEX101Q9BY14 249 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 LYRM4Q9HD34 91 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 FZD3Q9NPG1 666 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 CIDEBQ9UHD4 219 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PRDM4Q9UKN5 801 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 YBX2Q9Y2T7 364 aaKnown RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 CSNK1G3Q9Y6M4 447 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 PHYHO14832 338 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ZNF821O75541 412 aaPredicted RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 ZNF648Q5T619 568 aaPredicted RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 MLIPQ5VWP3 458 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 COMMD2Q86X83 199 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ZNF229Q9UJW7 825 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 BRCA1P38398 1863 aaKnown RBP13.03□□□□□ -0.32
LDLR-201ENST00000252444 GPR3P46089 330 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 RRADP55042 308 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 ARMC4Q5T2S8 1044 aa13.03□□□□□ -0.32
LDLR-201ENST00000252444 C2CD4DB7Z1M9 353 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 BTN3A3O00478 584 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 B4GALT2O60909 372 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 SERPINI2O75830 405 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 HSMCR30P0CW71 290 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 ALDH3A2P51648 485 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 FLYWCH1Q4VC44 716 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 TMEM196Q5HYL7 178 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 SPANXN2Q5MJ10 180 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 ATG14Q6ZNE5 492 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 ZNF354BQ96LW1 612 aa13.02□□□□□ -0.32
LDLR-201ENST00000252444 LILRA5A6NI73 299 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 WASHC1A8K0Z3 465 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SYNGR4O95473 234 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 UBL4AP11441 157 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 CTSCP53634 463 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SH3BP2P78314 561 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 ZNF267Q14586 743 aaPredicted RBP13.02□□□□□ -0.33
LDLR-201ENST00000252444 NRF1Q16656 503 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SLC44A3Q8N4M1 653 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 BPIFB6Q8NFQ5 453 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 HSH2DQ96JZ2 352 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 BTBD2Q9BX70 525 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 PINK1Q9BXM7 581 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SACM1LQ9NTJ5 587 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 OPRD1P41143 372 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SEPHS1P49903 392 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 CLCA4Q14CN2 919 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 B3GNT6Q6ZMB0 384 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 TRIM46Q7Z4K8 759 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 AMIGO2Q86SJ2 522 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 LGI4Q8N135 537 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 SLC5A8Q8N695 610 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 ZNF480Q8WV37 535 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 MVB12AQ96EY5 273 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 PIP5K1AQ99755 562 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 ZNFX1Q9P2E3 1918 aaKnown RBP13.02□□□□□ -0.33
LDLR-201ENST00000252444 PNMTP11086 282 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 GGT5P36269 586 aa13.02□□□□□ -0.33
LDLR-201ENST00000252444 CASP6P55212 293 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms