RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TGDSO95455 350 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 KLK3P07288 261 aaPredicted RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 FHP07954 510 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 FAM58BPP0C7Q3 252 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 BCKDHAP12694 445 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 RNH1P13489 461 aaKnown RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 ACPPP15309 386 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 DRD4P21917 467 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 LSP1P33241 339 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 DLSTP36957 453 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 RAP1GDS1P52306 607 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 SEC24CP53992 1094 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 RPL38P63173 70 aaKnown RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 PHEXP78562 749 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 MC1RQ01726 317 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 TNFRSF17Q02223 184 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 NR6A1Q15406 480 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 MPEG1Q2M385 716 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 SPIN4Q56A73 249 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 TMEM198Q66K66 360 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 CPZQ66K79 652 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 FAM71E1Q6IPT2 247 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 PPP1R32Q7Z5V6 425 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 CRLF3Q8IUI8 442 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 SPACA3Q8IXA5 215 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 RIMKLAQ8IXN7 391 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 DDIASQ8IXT1 998 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 FAM47BQ8NA70 645 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 OR2Y1Q8NGV0 311 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 ACTRT2Q8TDY3 377 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 C16orf78Q8WTQ4 265 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 STON2Q8WXE9 905 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 TSLPQ969D9 159 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 COL26A1Q96A83 441 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 TBC1D20Q96BZ9 403 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 THOC1Q96FV9 657 aaKnown RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 FAR2Q96K12 515 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 OR1F2PQ96R84 312 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 WDR77Q9BQA1 342 aaPredicted RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 C1orf50Q9BV19 199 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 EBPLQ9BY08 206 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 ZNF385DQ9H6B1 395 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 SOX17Q9H6I2 414 aaPredicted RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 NECTIN3Q9NQS3 549 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 IFT80Q9P2H3 777 aaPredicted RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 ZNF282Q9UDV7 671 aaPredicted RBP8.74□□□□□ -1.01
VPS35-211ENST00000569950 VTI1BQ9UEU0 232 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 METRNQ9UJH8 293 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 TCFL5Q9UL49 500 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 HS3ST3B1Q9Y662 390 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 BSNQ9UPA5 3926 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 CPAMD8Q8IZJ3 1885 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 CHD6Q8TD26 2715 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 CNTRLQ7Z7A1 2325 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 A0A087WV48 116 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 LOC102723996A0A087X1L8 192 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ARHGAP10A1A4S6 786 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 IDSB3KWA1 339 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 SOCS6O14544 535 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 RGS14O43566 566 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 FGF17O60258 216 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 SHOX2O60902 331 aaPredicted RBP8.73□□□□□ -1.01
VPS35-211ENST00000569950 SEC22BO75396 215 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 IL3P08700 152 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ANXA4P09525 319 aaPredicted RBP8.73□□□□□ -1.01
VPS35-211ENST00000569950 MAOAP21397 527 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ITPKBP27987 946 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 PTPN4P29074 926 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 PPP2R1BP30154 601 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 AQP5P55064 265 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 TRA2BP62995 288 aaKnown RBP8.73□□□□□ -1.01
VPS35-211ENST00000569950 TLE3Q04726 772 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 EMX2Q04743 252 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 TGM3Q08188 693 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ACSM2AQ08AH3 577 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 PDE7AQ13946 482 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 PTGR1Q14914 329 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 SMU1Q2TAY7 513 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 LSM12Q3MHD2 195 aaKnown RBP8.73□□□□□ -1.01
VPS35-211ENST00000569950 TUBB8Q3ZCM7 444 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 GALNTL6Q49A17 601 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ZNF385BQ569K4 471 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 CCNYL2Q5T2Q4 361 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ATP1A1-AS1Q5TC04 95 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 NDUFAF5Q5TEU4 345 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 MLIPQ5VWP3 458 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ACSM2BQ68CK6 577 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 NIPAL1Q6NVV3 410 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 TMEM205Q6UW68 189 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 DGAT2L6Q6ZPD8 337 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 LANCL3Q6ZV70 420 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 GPR180Q86V85 440 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 PRSS58Q8IYP2 241 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 ZNF248Q8NDW4 579 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 PLPP5Q8NEB5 264 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 DNAJB14Q8TBM8 379 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 C10orf82Q8WW14 230 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 KCNE4Q8WWG9 221 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 SLC39A7Q92504 469 aa8.73□□□□□ -1.01
VPS35-211ENST00000569950 TUBGCP3Q96CW5 907 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms