RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 FRG2BQ96QU4 278 aa12.31□□□□□ -0.44
PRKDC-206ENST00000536429 ERVK-6Q9BXR3 956 aa12.31□□□□□ -0.44
PRKDC-206ENST00000536429 ROGDIQ9GZN7 287 aa12.31□□□□□ -0.44
PRKDC-206ENST00000536429 STMN3Q9NZ72 180 aa12.31□□□□□ -0.44
PRKDC-206ENST00000536429 ZNF223Q9UK11 482 aaPredicted RBP12.31□□□□□ -0.44
PRKDC-206ENST00000536429 ATG4BQ9Y4P1 393 aa12.31□□□□□ -0.44
PRKDC-206ENST00000536429 SHANK1Q9Y566 2161 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 A0A0A6YYD5 115 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 DYTNA2CJ06 578 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 TCP11X1B4DZS4 312 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 G3V2L1 256 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 FOXE1O00358 373 aaPredicted RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 CLDN4O14493 209 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 CTNSO60931 367 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 SUPT7LO94864 414 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 OR4F21O95013 312 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 PROCP04070 461 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 GSTA1P08263 222 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 KRT15P19012 456 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 TAC1P20366 129 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 CPN2P22792 545 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 PTX3P26022 381 aaPredicted RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 PRKAA2P54646 552 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 AP2B1P63010 937 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 SRSF11Q05519 484 aaKnown RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 SRSF1Q07955 248 aaKnown RBP eCLIP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 MRPL49Q13405 166 aaKnown RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 GGTA1PQ4G0N0 100 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 ZNF468Q5VIY5 522 aaPredicted RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 MRM1Q6IN84 353 aaKnown RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 WDR93Q6P2C0 686 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 LCA5Q86VQ0 697 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 OR4N5Q8IXE1 308 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 C4orf33Q8N1A6 199 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 EFCAB3Q8N7B9 438 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 APCDD1LQ8NCL9 501 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 ARMC2Q8NEN0 867 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 SREK1Q8WXA9 508 aaKnown RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 HAS2Q92819 552 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 HBEGFQ99075 208 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 CDCP1Q9H5V8 836 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 ANKRD10Q9NXR5 420 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 MRPS33Q9Y291 106 aaKnown RBP12.3□□□□□ -0.44
PRKDC-206ENST00000536429 LRRK2Q5S007 2527 aa12.3□□□□□ -0.44
PRKDC-206ENST00000536429 TLDC2A0PJX2 215 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 OR5H15A6NDH6 313 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 FGF17O60258 216 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 PRKNO60260 465 aaPredicted RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 GLRA3O75311 464 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 OTCP00480 354 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 PDYNP01213 254 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 NUDT17P0C025 328 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 IMPDH1P20839 514 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 TSFMP43897 325 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 GPR143P51810 404 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 PHEXP78562 749 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 IFT88Q13099 833 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 CUL3Q13618 768 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 TUBA3CQ13748 450 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 RASA2Q15283 850 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 TTC19Q6DKK2 380 aaPredicted RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 TUBA3EQ6PEY2 450 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ZYG11AQ6WRX3 759 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 GPR180Q86V85 440 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ZCCHC7Q8N3Z6 543 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ZNF321PQ8N8H1 164 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 CDYL2Q8N8U2 506 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 B3GNT7Q8NFL0 401 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 DOK4Q8TEW6 326 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 THAP3Q8WTV1 239 aaPredicted RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 NCLNQ969V3 563 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ZNF354BQ96LW1 612 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 SIGLEC12Q96PQ1 595 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 TAAR6Q96RI8 345 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 BARD1Q99728 777 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 MRPL1Q9BYD6 325 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 HES7Q9BYE0 225 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 PARD6BQ9BYG5 372 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ALOXE3Q9BYJ1 711 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 RNF32Q9H0A6 362 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 GSTO2Q9H4Y5 243 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ELOVL6Q9H5J4 265 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 DDX31Q9H8H2 851 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 PSD3Q9NYI0 1048 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 DCDC2Q9UHG0 476 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ASB4Q9Y574 426 aa12.29□□□□□ -0.44
PRKDC-206ENST00000536429 COPG1Q9Y678 874 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 USP9XQ93008 2570 aaPredicted RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 ASH1LQ9NR48 2969 aaKnown RBP12.29□□□□□ -0.44
PRKDC-206ENST00000536429 TRBV11-1A0A0K0K1C0 115 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 A0A1W2PR48 441 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 A0A1W2PS29 197 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 ARHGAP10A1A4S6 786 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 GLOD5A6NK44 160 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 GABRR3A8MPY1 467 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 UBFD1O14562 309 aaKnown RBP12.28□□□□□ -0.44
PRKDC-206ENST00000536429 PROM1O43490 865 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 PLIN3O60664 434 aa12.28□□□□□ -0.44
PRKDC-206ENST00000536429 CDH16O75309 829 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms