RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 UROSP10746 265 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 SFNP31947 248 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 FNTBP49356 437 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 P2RY4P51582 365 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CTSCP53634 463 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 PPP3R1P63098 170 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ITPK1Q13572 414 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ST3GAL2Q16842 350 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 KLHL26Q53HC5 615 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 FCRLBQ6BAA4 426 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 GDPGP1Q6ZNW5 385 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 USP53Q70EK8 1073 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ARL6IP6Q8N6S5 226 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 IL17RCQ8NAC3 791 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 GMCL1P1Q8NEA9 526 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 WNT2BQ93097 391 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 GTPBP3Q969Y2 492 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 FBXO17Q96EF6 278 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 HSH2DQ96JZ2 352 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 KCTD7Q96MP8 289 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 TSNAXQ99598 290 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CDCA4Q9BXL8 241 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 NLGN3Q9NZ94 848 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 FZD10Q9ULW2 581 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 UBIAD1Q9Y5Z9 338 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 IRAK3Q9Y616 596 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 GOLGB1Q14789 3259 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 A0A1B0GVI7 797 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 OR2W5A6NFC9 320 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CCNB2O95067 398 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 HLA-DQB1P01920 261 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CRYBA1P05813 215 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CXCL2P19875 107 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 C4BPBP20851 252 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 DRD5P21918 477 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ATP5A1P25705 553 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 DEFA6Q01524 100 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 LRRC74AQ0VAA2 488 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ELP2Q6IA86 826 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 FAHD1Q6P587 224 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ZCCHC12Q6PEW1 402 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 LCLAT1Q6UWP7 414 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 DEF8Q6ZN54 512 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 TMEM91Q6ZNR0 172 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 SSX9Q7RTT3 188 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 RELL2Q8NC24 303 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CNOT9Q92600 299 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 HGDQ93099 445 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 OTULINQ96BN8 352 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF707Q96C28 371 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 NELL2Q99435 816 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 SARGQ9BW04 601 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 FSD1LQ9BXM9 530 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 DPY30Q9C005 99 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ABCG8Q9H221 673 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 TAS2R3Q9NYW6 316 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 SIX4Q9UIU6 781 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 MIA3Q5JRA6 1907 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 METTL21EPA6NDL7 271 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 ADAMDEC1O15204 470 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 IGHV2-70P01814 119 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CXCL8P10145 99 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 AQP1P29972 269 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 RFC3P40938 356 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 PRAMEF18Q5VWM3 479 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 MLIPQ5VWP3 458 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 USP30Q70CQ3 517 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 HSD17B13Q7Z5P4 300 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 MCATQ8IVS2 390 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 TMEM192Q8IY95 271 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 CLDN22Q8N7P3 220 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 DNAJB8Q8NHS0 232 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 KCNJ15Q99712 375 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 GHRLQ9UBU3 117 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 MEIKINA0A087WXM9 373 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 TMEM200CA6NKL6 621 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 J3KR12 359 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 GPR37O15354 613 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 RPS6KA4O75676 772 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 GLP2RO95838 553 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 C1QCP02747 245 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 IL6P05231 212 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 NUDT7P0C024 238 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 GIFP27352 417 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 CRKP46108 304 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 HSPA7P48741 367 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 EVX1P49640 407 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 SNTB1Q13884 538 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 PLA1AQ53H76 456 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 XKR7Q5GH72 579 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 HECTD3Q5T447 861 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF730Q6ZMV8 503 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 PDZD4Q76G19 769 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 DEFB106AQ8N104 65 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 NPWQ8N729 165 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 GLYATL2Q8WU03 294 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 TM9SF4Q92544 642 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 RAD51AP1Q96B01 352 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 NIPSNAP1Q9BPW8 284 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 BCO2Q9BYV7 579 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms