RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CLEC1AQ8NC01 280 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 NPEPL1Q8NDH3 523 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 OR4K1Q8NGD4 311 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 OR13J1Q8NGT2 312 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 SLC26A7Q8TE54 656 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CKAP2Q8WWK9 683 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 IRGQQ8WZA9 623 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CFAP36Q96G28 342 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 FAM71F1Q96KD3 344 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 CCDC42Q96M95 316 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 SPATA13Q96N96 652 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 FAM111AQ96PZ2 611 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ERGIC2Q96RQ1 377 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 NAP1L3Q99457 506 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 RHOXF2Q9BQY4 288 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 NEURL2Q9BR09 285 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ZNF559Q9BR84 538 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TRAF4Q9BUZ4 470 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 IDI2Q9BXS1 227 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TSGA10Q9BZW7 698 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 VN1R1Q9GZP7 353 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 NT5C3AQ9H0P0 336 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ABCG4Q9H172 646 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 GLT8D2Q9H1C3 349 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TDRD3Q9H7E2 651 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 DDX31Q9H8H2 851 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 RAB9BQ9NP90 201 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 GKN1Q9NS71 199 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 FAM207AQ9NSI2 230 aaPredicted RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 INTS10Q9NVR2 710 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 P4HTMQ9NXG6 502 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 SMARCAL1Q9NZC9 954 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 PKD2L2Q9NZM6 624 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 ACTR3BQ9P1U1 418 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 NYAP2Q9P242 653 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 SH3BGRL2Q9UJC5 107 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 PRDM4Q9UKN5 801 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 BLOC1S6Q9UL45 172 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 RUVBL2Q9Y230 463 aaKnown RBP3.82□□□□□ -1.8
VPS29-202ENST00000447578 WDR83OSQ9Y284 106 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 OR2W1Q9Y3N9 320 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 TEX264Q9Y6I9 313 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 MYH2Q9UKX2 1941 aa3.82□□□□□ -1.8
VPS29-202ENST00000447578 CCDC88AQ3V6T2 1871 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 TAF1LQ8IZX4 1826 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 IGLV5-52A0A0A0MRZ9 124 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 CASTOR2A6NHX0 329 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 EPHB6O15197 1021 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 SNX3O60493 162 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ERLIN1O75477 346 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 GNA14O95837 355 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MOCS2O96007 188 aaPredicted RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 PLEKP08567 350 aaPredicted RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 HSPA8P11142 646 aaKnown RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 CCNA2P20248 432 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 AHCYP23526 432 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MAGEA1P43355 309 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MAGEB1P43366 347 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 IER3P46695 156 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 RPL21P46778 160 aaKnown RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 RABIFP47224 123 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MLLT10P55197 1068 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 HSD17B7P56937 341 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 FKBP3Q00688 224 aaKnown RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 BNC1Q01954 994 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ARHGAP1Q07960 439 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 SLC20A2Q08357 652 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 DMPKQ09013 629 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ZNF415Q09FC8 603 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MYBPHQ13203 477 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 TRA2AQ13595 282 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS29-202ENST00000447578 PDE7AQ13946 482 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 INAQ16352 499 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 DUOXA1Q1HG43 343 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 UGT3A2Q3SY77 523 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 USH1GQ495M9 461 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 PHLDA2Q53GA4 152 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 HERC4Q5GLZ8 1057 aaPredicted RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 ELFN2Q5R3F8 820 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 CYP4A22Q5TCH4 519 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 FAM46CQ5VWP2 391 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 KCTD11Q693B1 232 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 FAM166AQ6J272 317 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 C8orf82Q6P1X6 216 aaPredicted RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 PRSS55Q6UWB4 352 aaPredicted RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 MFSD7Q6UXD7 560 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ISLR2Q6UXK2 745 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 LINGO4Q6UY18 593 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ASB18Q6ZVZ8 466 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 EXOC3L1Q86VI1 746 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ZNF410Q86VK4 478 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 NUDT13Q86X67 352 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ODF3L1Q8IXM7 274 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 LGI2Q8N0V4 545 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 CRYBG2Q8N1P7 616 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MRPL43Q8N983 215 aaKnown RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 NOA1Q8NC60 698 aaKnown RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 CCNYQ8ND76 341 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 GMCL1P1Q8NEA9 526 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 ERMNQ8TAM6 284 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms