RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 GPR68Q15743 365 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 RGS21Q2M5E4 152 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 METRNLQ641Q3 311 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PPP1R3BQ86XI6 285 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 OR5K2Q8NHB8 316 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 CRB3Q9BUF7 120 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 SPAG4Q9NPE6 437 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 SEMA4GQ9NTN9 838 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PTBP2Q9UKA9 531 aaKnown RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 COPG1Q9Y678 874 aaKnown RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PCNX2A6NKB5 2137 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ALPK2Q86TB3 2170 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 G3V2L1 256 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 H0YGG7 62 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 JRKO75564 520 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 OPN1SWP03999 348 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ALOX12P18054 663 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 BCAP31P51572 246 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 XKP51811 444 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ARF3P61204 181 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 RPS15P62841 145 aaKnown RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 TBCELQ5QJ74 424 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 SLC35F3Q8IY50 421 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 NLGN4XQ8N0W4 816 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 CADM2Q8N3J6 435 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 OR7A2PQ8NGA2 310 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 APIPQ96GX9 242 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 DGAT2Q96PD7 388 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 SLC29A1Q99808 456 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 DUSP26Q9BV47 211 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 OLAHQ9NV23 265 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ACSL6Q9UKU0 697 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 FUOMA2VDF0 154 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF701M0R085 212 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 FBP2O00757 339 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ACOT8O14734 319 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 VPS4BO75351 444 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 EBLN1P0CF75 366 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 MPC1LP0DKB6 136 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 TFPIP10646 304 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 NCK1P16333 377 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ITIH1P19827 911 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 XCR1P46094 333 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 RGS19P49795 217 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 TRAP1Q12931 704 aaKnown RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 C1QTNF12Q5T7M4 302 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 XKR5Q6UX68 686 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 RNF44Q7L0R7 432 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 R3HCC1LQ7Z5L2 792 aaKnown RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 MARCH9Q86YJ5 346 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 CENPSQ8N2Z9 138 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 TP53I13Q8NBR0 393 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 OR10A6Q8NH74 314 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 NUDT8Q8WV74 236 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 NSMCE2Q96MF7 247 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 DEPDC7Q96QD5 511 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ZDHHC5Q9C0B5 715 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 C3orf14Q9HBI5 128 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ZBTB20Q9HC78 741 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 OR6C2Q9NZP2 312 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 KCMF1Q9P0J7 381 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 DNAJC15Q9Y5T4 150 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 SCN3AQ9NY46 2000 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 OTOGLQ3ZCN5 2332 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 NRP2O60462 931 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 PRMT3O60678 531 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 BCL10O95999 233 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 RPS3P23396 243 aaKnown RBP eCLIP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 CCR5P51681 352 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 STARD6P59095 220 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 CSTF3Q12996 717 aaKnown RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 RPA4Q13156 261 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 SP140Q13342 867 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ITGADQ13349 1161 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 KCNC3Q14003 757 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 GRM7Q14831 915 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 NEDD8Q15843 81 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 SLC2A7Q6PXP3 512 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 UNC5DQ6UXZ4 953 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ATG14Q6ZNE5 492 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF765Q7L2R6 523 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF551Q7Z340 670 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ANKRD60Q9BZ19 345 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 CCDC90BQ9GZT6 254 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 PCTPQ9UKL6 214 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 DOCK9Q9BZ29 2069 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 A6NCN8 305 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 PPM1DO15297 605 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 SCRG1O75711 98 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 EFEMP2O95967 443 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 IGHV4-34P06331 123 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 FBLP22087 321 aaKnown RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 PRDX1Q06830 199 aaKnown RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 ANKDD1AQ495B1 522 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 RFTN2Q52LD8 501 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-205ENST00000392004 NELL1Q92832 810 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 PRTFDC1Q9NRG1 225 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 KLHL28Q9NXS3 571 aa9.82□□□□□ -0.84
COL6A3-205ENST00000392004 LEF1Q9UJU2 399 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms