RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SNX3O60493 162 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 CCNT2O60583 730 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 STK16O75716 305 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 DNAJB5O75953 348 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 ACTL6BO94805 426 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 TGDSO95455 350 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 JUNP05412 331 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 HIST1H2AGP0C0S8 130 aaPredicted RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 FTH1P19P0C7X4 201 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 MTHFD1P11586 935 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 HIST1H2ADP20671 130 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 SERPINB5P36952 375 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 KCNJ5P48544 419 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 PIK3CGP48736 1102 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 FOXA1P55317 472 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 NRG3P56975 720 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 ERVPABLB-1P60509 514 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 TAP2Q03519 686 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 ASPHQ12797 758 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 ILF3Q12906 894 aaKnown RBP eCLIP3.4□□□□□ -1.86
MCF2-202ENST00000370573 TRAF3Q13114 568 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 NAE1Q13564 534 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 GTF2H2Q13888 395 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 SHBQ15464 509 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 CFAP157Q5JU67 520 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 GTF2H2CQ6P1K8 395 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 TAF8Q7Z7C8 310 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 CRLF3Q8IUI8 442 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 TBC1D21Q8IYX1 336 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 SLC15A4Q8N697 577 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 STPG3Q8N7X2 389 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 OR52B6Q8NGF0 335 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 OR5K2Q8NHB8 316 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 AGR3Q8TD06 166 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 BCAS4Q8TDM0 211 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 LMX1AQ8TE12 382 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 CREB3L4Q8TEY5 395 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 AGAP11Q8TF27 550 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 PIGKQ92643 395 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 RAD51AP1Q96B01 352 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 KCNA7Q96RP8 456 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 H2AFJQ9BTM1 129 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 HGH1Q9BTY7 390 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 BTBD2Q9BX70 525 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 GSDMCQ9BYG8 508 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 KRTAP4-5Q9BYR2 181 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 ILKAPQ9H0C8 392 aaPredicted RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 PCDHAC1Q9H158 963 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 PRDM13Q9H4Q3 707 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 SLC32A1Q9H598 525 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 XKR8Q9H6D3 395 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 NOL11Q9H8H0 719 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 MID1IP1Q9NPA3 183 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 FSCN3Q9NQT6 498 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 IMP3Q9NV31 184 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 WWOXQ9NZC7 414 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 APOBEC3BQ9UH17 382 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 DAPP1Q9UN19 280 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 SH2B3Q9UQQ2 575 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 TDRKHQ9Y2W6 561 aaKnown RBP3.4□□□□□ -1.86
MCF2-202ENST00000370573 RAP2CQ9Y3L5 183 aa3.4□□□□□ -1.86
MCF2-202ENST00000370573 KMT2EQ8IZD2 1858 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 CACNA1HO95180 2353 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 KCNE1BA0A087WTH5 132 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 A0A1W2PPV9 198 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 PATE3B3GLJ2 98 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 K7EPI3 171 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 MATN2O00339 956 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 PCDH17O14917 1159 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 YY2O15391 372 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SDC3O75056 442 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 WDR47O94967 919 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 OR4F21O95013 312 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 FGF4P08620 206 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 GIMD1P0DJR0 217 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 GAAP10253 952 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 ERGP11308 486 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 F3P13726 295 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 CTSEP14091 401 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 NPPBP16860 134 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 EGR1P18146 543 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 BTF3P20290 206 aaKnown RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 HNMTP50135 292 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 RPL14P50914 215 aaKnown RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 PER3P56645 1201 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 C21orf59P57076 290 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 UBE2IP63279 158 aaKnown RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 LCP2Q13094 533 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 PRKAA1Q13131 559 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 RBBP7Q16576 425 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 LPAL2Q16609 132 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 CYP2A13Q16696 494 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SLC9B1Q4ZJI4 515 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 TCHHL1Q5QJ38 904 aaPredicted RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 SH2D4BQ5SQS7 431 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 VWA5B1Q5TIE3 1220 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 CLEC6AQ6EIG7 209 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 METTL2BQ6P1Q9 378 aaKnown RBP3.4□□□□□ -1.87
MCF2-202ENST00000370573 SUSD1Q6UWL2 747 aa3.4□□□□□ -1.87
MCF2-202ENST00000370573 SPATA21Q7Z572 469 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms