RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 IQCKQ8N0W5 287 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 CYP4X1Q8N118 509 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 EFCAB3Q8N7B9 438 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 ACOT4Q8N9L9 421 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 FAM47BQ8NA70 645 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 SRFBP1Q8NEF9 429 aaKnown RBP14.09□□□□□ -0.15
VPS39-210ENST00000568357 UBLCP1Q8WVY7 318 aaPredicted RBP14.09□□□□□ -0.15
VPS39-210ENST00000568357 HAS2Q92819 552 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 CSF3RQ99062 836 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 NPAS2Q99743 824 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 MAPKAP1Q9BPZ7 522 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PRM3Q9NNZ6 103 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 MMP25Q9NPA2 562 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 DMRT3Q9NQL9 472 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PRTFDC1Q9NRG1 225 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 ASF1BQ9NVP2 202 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PSMC3IPQ9P2W1 217 aaPredicted RBP14.09□□□□□ -0.15
VPS39-210ENST00000568357 ADGRE2Q9UHX3 823 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PCTPQ9UKL6 214 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 NTNG1Q9Y2I2 539 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PCDHGA11Q9Y5H2 935 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 NUP210LQ5VU65 1888 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 CACNA1DQ01668 2161 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 A0A1B0GTL3 188 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 A0A1W2PPM1 405 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 A8MT66 165 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 ZNF500O60304 480 aaPredicted RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 MAN1A2O60476 641 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 CLDN9O95484 217 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 PYGBP11216 843 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 HIST1H1TP22492 207 aaPredicted RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 TNFSF10P50591 281 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 HSD17B7P56937 341 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 RPS13P62277 151 aaKnown RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 ARG2P78540 354 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 ZNF33BQ06732 778 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 ZNF169Q14929 603 aaPredicted RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 TLR1Q15399 786 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 ZRSR2Q15696 482 aaKnown RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 AP5B1Q2VPB7 878 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 ATCAYQ86WG3 371 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 NFAM1Q8NET5 270 aaPredicted RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 OR1N1Q8NGS0 311 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 WDR20Q8TBZ3 569 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 ATP6V1E2Q96A05 226 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 CCDC77Q9BR77 488 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 NTMT1Q9BV86 223 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 COPS7BQ9H9Q2 264 aaPredicted RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 KCNK13Q9HB14 408 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 SEMA4BQ9NPR2 832 aaPredicted RBP14.08□□□□□ -0.16
VPS39-210ENST00000568357 MAP10Q9P2G4 905 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 MMACHCQ9Y4U1 282 aa14.08□□□□□ -0.16
VPS39-210ENST00000568357 DOCK10Q96BY6 2186 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 MYOCOSA0A1B0GUC4 107 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 DYTNA2CJ06 578 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 TCP11X1B4DZS4 312 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 CLDN4O14493 209 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 DLX3O60479 287 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 CTNSO60931 367 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 VPS4BO75351 444 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 SCELO95171 688 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ETHE1O95571 254 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 RPS17P08708 135 aaKnown RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 TSPAN8P19075 237 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 GNLYP22749 145 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 PTX3P26022 381 aaPredicted RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 PPP2R1BP30154 601 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 SLCO1A2P46721 670 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 UQCRFS1P47985 274 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ST13P50502 369 aaKnown RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 CCNG1P51959 295 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 CDH13P55290 713 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 TRAF3Q13114 568 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 SLC13A2Q13183 592 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ACER2Q5QJU3 275 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ABHD17BQ5VST6 288 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 OR4C11Q6IEV9 310 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 SH2D5Q6ZV89 423 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 CLNKQ7Z7G1 428 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ZNF595Q8IYB9 648 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 KIF2BQ8N4N8 673 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 GALNT11Q8NCW6 608 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ARMC2Q8NEN0 867 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ACMSDQ8TDX5 336 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ELP5Q8TE02 316 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ZNF483Q8TF39 744 aaPredicted RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.07□□□□□ -0.16
VPS39-210ENST00000568357 RGMAQ96B86 450 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 MTFMTQ96DP5 389 aaKnown RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 BARD1Q99728 777 aaKnown RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 C1QTNF3Q9BXJ4 246 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 ROGDIQ9GZN7 287 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 LYRM4Q9HD34 91 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 VPS4AQ9UN37 437 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 COPG1Q9Y678 874 aaKnown RBP14.07□□□□□ -0.16
VPS39-210ENST00000568357 ITPR2Q14571 2701 aa14.07□□□□□ -0.16
VPS39-210ENST00000568357 SAGE2PA6NJ88 616 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 PLPP1O14494 284 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 UQCRHP07919 91 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 ARL1P40616 181 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms