RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 STMN3Q9NZ72 180 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FTSJ1Q9UET6 329 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 RPS6KA6Q9UK32 745 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 RIMKLBQ9ULI2 386 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SCML2Q9UQR0 700 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SLC22A14Q9Y267 594 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ITM2BQ9Y287 266 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MTMR11A4FU01 709 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM88BA6NKF7 163 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 WASHC1A8K0Z3 465 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF670-ZNF695F2Z2N8 137 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 AKAP8O43823 692 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MTX2O75431 263 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CCNB2O95067 398 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 IGHA2P01877 340 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HIST1H2AGP0C0S8 130 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CKBP12277 381 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 COX7A2P14406 83 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF7P17097 686 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 GJA1P17302 382 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TYMPP19971 482 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HIST1H2ADP20671 130 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PSMA3P25788 255 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CSTF2P33240 577 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 IL12RB1P42701 662 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RORCP51449 518 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CSNK2BP67870 215 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SNTA1Q13424 505 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TNK1Q13470 666 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SEC23BQ15437 767 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SPHARQ15513 63 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PRSS53Q2L4Q9 553 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF385BQ569K4 471 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CLLU1OSQ5K130 101 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RTP2Q5QGT7 225 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 GPRC6AQ5T6X5 926 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 OR2G6Q5TZ20 316 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CEACAM20Q6UY09 585 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PTCHD4Q6ZW05 846 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TMCO2Q7Z6W1 182 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TCTE3Q8IZS6 198 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 STK40Q8N2I9 435 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PGBD3Q8N328 593 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 AQP11Q8NBQ7 271 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 DENND6BQ8NEG7 585 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 OR11H4Q8NGC9 324 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 OR5AK3PQ8NH89 298 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RASSF5Q8WWW0 418 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TM9SF4Q92544 642 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SLC25A46Q96AG3 418 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 NACC2Q96BF6 587 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 OMA1Q96E52 524 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM169Q96HH4 297 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MS4A3Q96HJ5 214 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HIST1H2AHQ96KK5 128 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HIST1H2AJQ99878 128 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 H2AFJQ9BTM1 129 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FAM126AQ9BYI3 521 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MCOLN1Q9GZU1 580 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ELOVL6Q9H5J4 265 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 IL26Q9NPH9 171 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 UCKL1Q9NWZ5 548 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TXNL4BQ9NX01 149 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 EXO1Q9UQ84 846 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 VPS9D1Q9Y2B5 631 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PADI2Q9Y2J8 665 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HCN4Q9Y3Q4 1203 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CEP290O15078 2479 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TRBV4-1A0A0J9YWV2 114 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SLC35F4A4IF30 521 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 M0QZQ0 153 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ADAMDEC1O15204 470 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 LANCL1O43813 399 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 NOS1APO75052 506 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TNFRSF21O75509 655 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 WDR47O94967 919 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 KLKB1P03952 638 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 TSPAN19P0C672 248 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ATF6P18850 670 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RPS3P23396 243 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 PKLRP30613 574 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CRATP43155 626 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ACLYP53396 1101 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SELENOWP63302 87 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ARF5P84085 180 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 BCL2L1Q07817 233 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 MGAT3Q09327 533 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 HKDC1Q2TB90 917 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ESCO2Q56NI9 601 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 IER5LQ5T953 404 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 CACUL1Q86Y37 369 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 RBM45Q8IUH3 476 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SYT12Q8IV01 421 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 C9orf62Q8N4C0 152 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 ARL14EPQ8N8R7 260 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 FAM181AQ8N9Y4 354 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 OR52P1PQ8NH57 321 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 POLR2J2Q9GZM3 115 aaKnown RBP4.64□□□□□ -1.67
LIMA1-214ENST00000552783 SLC25A19Q9HC21 320 aa4.64□□□□□ -1.67
LIMA1-214ENST00000552783 COMMD3Q9UBI1 195 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms