RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C3orf30Q96M34 536 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ACOX2Q99424 681 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SOSTQ9BQB4 213 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 MLPHQ9BV36 600 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 CATSPERBQ9H7T0 1116 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SMURF2Q9HAU4 748 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ZNF334Q9HCZ1 680 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 TNFRSF12AQ9NP84 129 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SPASTQ9UBP0 616 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 NUFIP1Q9UHK0 495 aaKnown RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 ING4Q9UNL4 249 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SAMD4AQ9UPU9 718 aaKnown RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 KLHL20Q9Y2M5 609 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 NEUROG3Q9Y4Z2 214 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 A0A1B0GVI7 797 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 PQLC2LA1A4F0 135 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ELOVL7A1L3X0 281 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 GNGT2O14610 69 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 PIP5K1BO14986 540 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ERN1O75460 977 aaKnown RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 GJB3O75712 270 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 H2AFB1P0C5Y9 115 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 H2AFB2P0C5Z0 115 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 HGFP14210 728 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 HPGDP15428 266 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ITGB6P18564 788 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 LPOP22079 712 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 ABCG1P45844 678 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 HNMTP50135 292 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CDH8P55286 799 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 RAG2P55895 527 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CYP4F8P98187 520 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 PAGE3Q5JUK9 113 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 LCN1P1Q5VSP4 162 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SPESP1Q6UW49 350 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ZSWIM9Q86XI8 627 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 TAGAPQ8N103 731 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ZNF565Q8N9K5 539 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ZNF680Q8NEM1 530 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ACVR1CQ8NER5 493 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 LPCAT1Q8NF37 534 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 GPR152Q8TDT2 470 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 APH1BQ8WW43 257 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 AUTS2Q8WXX7 1259 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 DNASE1L2Q92874 299 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 PYCR2Q96C36 320 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 PYURFQ96I23 114 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 TEKT5Q96M29 485 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 DMRTB1Q96MA1 342 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 FYTTD1Q96QD9 318 aaKnown RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 FCRL5Q96RD9 977 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 EPYCQ99645 322 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 OMDQ99983 421 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 COPS4Q9BT78 406 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 MENTQ9BUN1 341 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 KLHL8Q9P2G9 620 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 AASSQ9UDR5 926 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CLEC4AQ9UMR7 237 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 BOLA1Q9Y3E2 137 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CMAHPQ9Y471 501 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 XIRP2A4UGR9 3374 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 TRBV5-3A0A0A0MS03 114 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 C7orf66A4D0T2 115 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ZNF197O14709 1029 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GPR39O43194 453 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 HCRTO43612 131 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 USP12O75317 370 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ANXA9O76027 345 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ECDO95905 644 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 FBXO45P0C2W1 286 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 OR56A5P0C7T3 313 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 NCK1P16333 377 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 NMBRP28336 390 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PRKAR1BP31321 381 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GGT2P36268 569 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 CCR2P41597 374 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MATKP42679 507 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MAP2K3P46734 347 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GLRBP48167 497 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SOX9P48436 509 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 RING1Q06587 406 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PIGFQ07326 219 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MAD2L1Q13257 205 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 ZNF77Q15935 545 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ZNF674Q2M3X9 581 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 SLC39A12Q504Y0 691 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PPP1R26Q5T8A7 1209 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 SH3PXD2AQ5TCZ1 1133 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 OTUD1Q5VV17 481 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 PLET1Q6UQ28 207 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 TMEM107Q6UX40 140 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 GAREM2Q75VX8 874 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PID1Q7Z2X4 250 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MON1AQ86VX9 555 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 ATCAYQ86WG3 371 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 MFSD6LQ8IWD5 586 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP28-213ENST00000544967 DNAAF3Q8N9W5 541 aa5.04□□□□□ -1.6
USP28-213ENST00000544967 TTC29Q8NA56 475 aaPredicted RBP5.04□□□□□ -1.6
USP28-213ENST00000544967 AVL9Q8NBF6 648 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms