RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CNTRLQ7Z7A1 2325 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 EIF3FO00303 357 aaPredicted RBP16.12■□□□□ 0.17
USP28-208ENST00000540438 LINC01565O15544 149 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 CLPXO76031 633 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 GRK5P34947 590 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 ASMTP46597 345 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 KIAA1211LQ6NV74 962 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 METTL2BQ6P1Q9 378 aaKnown RBP16.12■□□□□ 0.17
USP28-208ENST00000540438 C17orf64Q86WR6 236 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 TAGAPQ8N103 731 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 HDDC3Q8N4P3 179 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 IQCF1Q8N6M8 205 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 AQP11Q8NBQ7 271 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 RAB2BQ8WUD1 216 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 APOL4Q9BPW4 351 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 C8orf4Q9NR00 106 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 TBC1D23Q9NUY8 699 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 FBXW2Q9UKT8 454 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 MUC3AQ02505 3323 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 TRBV4-1A0A0J9YWV2 114 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 KRBA1A5PL33 1030 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 H0Y8X5 98 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 LRRTM2O43300 516 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 UGT2B11O75310 529 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 GASTP01350 101 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 ACADLP28330 430 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 COMTD1Q86VU5 262 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 LACC1Q8IV20 430 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 TERB1Q8NA31 727 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 ZNF420Q8TAQ5 688 aaPredicted RBP16.12■□□□□ 0.17
USP28-208ENST00000540438 COQ8BQ96D53 544 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 VPS35Q96QK1 796 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 DOK1Q99704 481 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 OR52A5Q9H2C5 316 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 C1GALT1Q9NS00 363 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 IRAK3Q9Y616 596 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 PMF1-BGLAPU3KQ54 211 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 COL6A3P12111 3177 aa16.12■□□□□ 0.17
USP28-208ENST00000540438 M0R3H8 397 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 CKMT1AP12532 417 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 CD72P21854 359 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 ITGB7P26010 798 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 OPRD1P41143 372 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 CTSKP43235 329 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 ITGA1P56199 1179 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 CLDN2P57739 230 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 GPM6BQ13491 265 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 PIN1Q13526 163 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 FGL2Q14314 439 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 NEK10Q6ZWH5 1172 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 KIAA0907Q7Z7F0 614 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 ADCK1Q86TW2 530 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 LRRC56Q8IYG6 542 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 CENPSQ8N2Z9 138 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 ASB16Q96NS5 453 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 ACOT13Q9NPJ3 140 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 NDRG4Q9ULP0 352 aaKnown RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 TNFRSF21O75509 655 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 OR12D1P0DN82 309 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 GPC1P35052 558 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 DRD3P35462 400 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 SEPHS1P49903 392 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 TMBIM6P55061 237 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 LIM2P55344 173 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 SH3BGRP55822 239 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 TAS2R38P59533 333 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 CDK3Q00526 305 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 EPS8Q12929 822 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 PUM1Q14671 1186 aaKnown RBP eCLIP16.11■□□□□ 0.17
USP28-208ENST00000540438 ANXA8L1Q5VT79 327 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 FAM71E1Q6IPT2 247 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 TMEFF1Q8IYR6 380 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 FAM9CQ8IZT9 166 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 TMEM145Q8NBT3 493 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 OR8K5Q8NH50 307 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 OR14C36Q8NHC7 312 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 PHF10Q8WUB8 498 aaKnown RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 C6orf62Q9GZU0 229 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 ENPP5Q9UJA9 477 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 ZNF106Q9H2Y7 1883 aaKnown RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 SH3PXD2BA1X283 911 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 SLC9A3R1O14745 358 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 SEMA7AO75326 666 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 IFITM3Q01628 133 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 P2RY8Q86VZ1 359 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 OR2L2Q8NH16 312 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 SLC38A5Q8WUX1 472 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 DTNBP1Q96EV8 351 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 CHCHD6Q9BRQ6 235 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 SGPP1Q9BX95 441 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 BRF2Q9HAW0 419 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 IMPAD1Q9NX62 359 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 ZNF282Q9UDV7 671 aaPredicted RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 DUSP12Q9UNI6 340 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 TPRKBQ9Y3C4 175 aa16.11■□□□□ 0.17
USP28-208ENST00000540438 FAM32AQ9Y421 112 aaKnown RBP16.11■□□□□ 0.17
USP28-208ENST00000540438 EDDM13A0A1B0GTR0 161 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 C5orf58C9J3I9 102 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 H3BN98 237 aa16.1■□□□□ 0.17
USP28-208ENST00000540438 UGDHO60701 494 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms