RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MRPS2Q9Y399 296 aaKnown RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 TRBV5-3A0A0A0MS03 114 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 GSNP06396 782 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 CKMT1AP12532 417 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 CDKN2CP42773 168 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 EEFSECP57772 596 aaKnown RBP19.93■□□□□ 0.78
VPS28-208ENST00000527797 SNRPNP63162 240 aaKnown RBP19.93■□□□□ 0.78
VPS28-208ENST00000527797 PRTGQ2VWP7 1150 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 PROX2Q3B8N5 592 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 GTDC1Q4AE62 458 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 TMEM71Q6P5X7 295 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 KMT5CQ86Y97 462 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 MSRB3Q8IXL7 192 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 C10orf67Q8IYJ2 551 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 EHD3Q9NZN3 535 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 SEMA5BQ9P283 1151 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 SUCOQ9UBS9 1254 aaKnown RBP19.93■□□□□ 0.78
VPS28-208ENST00000527797 ATG4BQ9Y4P1 393 aa19.93■□□□□ 0.78
VPS28-208ENST00000527797 TTC28Q96AY4 2481 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 A0A1W2PR48 441 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 NVLO15381 856 aaKnown RBP19.92■□□□□ 0.78
VPS28-208ENST00000527797 HSD17B1P14061 328 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 EFNA1P20827 205 aaPredicted RBP19.92■□□□□ 0.78
VPS28-208ENST00000527797 PTPN6P29350 595 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 SEPHS1P49903 392 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 ACTR3P61158 418 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 RIPK1Q13546 671 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 NDUFA9Q16795 377 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 PRSS53Q2L4Q9 553 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 MPEG1Q2M385 716 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 MUM1Q2TAK8 710 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 INAVAQ3KP66 663 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 TCTE1Q5JU00 501 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 ZNF621Q6ZSS3 439 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 CIDECQ96AQ7 238 aaPredicted RBP19.92■□□□□ 0.78
VPS28-208ENST00000527797 ZNF285Q96NJ3 590 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 MAPKAP1Q9BPZ7 522 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 NUDT22Q9BRQ3 303 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 THUMPD3Q9BV44 507 aaKnown RBP19.92■□□□□ 0.78
VPS28-208ENST00000527797 SLC6A13Q9NSD5 602 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 TAS2R7Q9NYW3 318 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 PHF11Q9UIL8 331 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 AP3M1Q9Y2T2 418 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 NEUROG3Q9Y4Z2 214 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 PCDHGB2Q9Y5G2 931 aa19.92■□□□□ 0.78
VPS28-208ENST00000527797 A0A1W2PRB8 838 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 C1orf226A1L170 272 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 TOX3O15405 576 aaPredicted RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 PROM1O43490 865 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ENTPD5O75356 428 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 RPLP0P05388 317 aaKnown RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 HOXB9P17482 250 aaPredicted RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 MSX2P35548 267 aaPredicted RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 MTPNP58546 118 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 CCL7P80098 99 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 LIPEQ05469 1076 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 TRIM25Q14258 630 aaKnown RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 FAM156AQ8NDB6 213 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 OR4A15Q8NGL6 344 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 EXOSC8Q96B26 276 aaKnown RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 ASB9Q96DX5 294 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 LRRN3Q9H3W5 708 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 DNAAF2Q9NVR5 837 aaKnown RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 IRAK4Q9NWZ3 460 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 A8MU76 341 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 PDPK1O15530 556 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 GALR3O60755 368 aaPredicted RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 CPNE6O95741 557 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 AIFM1O95831 613 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 C6orf47O95873 294 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 CTSBP07858 339 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 RETP07949 1114 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ZCCHC18P0CG32 403 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 IL1RNP18510 177 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 RUNX2Q13950 521 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 SELPLGQ14242 412 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 TMTC4Q5T4D3 741 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 FBXW10Q5XX13 1052 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 IFI44Q8TCB0 444 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 SLC41A2Q96JW4 573 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 PHF12Q96QT6 1004 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ECSITQ9BQ95 431 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ALG2Q9H553 416 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ANKHQ9HCJ1 492 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 MS4A12Q9NXJ0 267 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 BCAP29Q9UHQ4 241 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ATXN7L1Q9ULK2 861 aaPredicted RBP19.91■□□□□ 0.78
VPS28-208ENST00000527797 VPS4AQ9UN37 437 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 NAALAD2Q9Y3Q0 740 aa19.91■□□□□ 0.78
VPS28-208ENST00000527797 ADAMTS9Q9P2N4 1935 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 MDC1Q14676 2089 aaKnown RBP19.9■□□□□ 0.78
VPS28-208ENST00000527797 A0A1W2PQM1 296 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 LNP1A1A4G5 178 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 DNAJA2O60884 412 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 CPN2P22792 545 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 BUD31P41223 144 aaPredicted RBP19.9■□□□□ 0.78
VPS28-208ENST00000527797 GRK6P43250 576 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 GSK3BP49841 420 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 LIM2P55344 173 aa19.9■□□□□ 0.78
VPS28-208ENST00000527797 MS4A2Q01362 244 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms