RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PRSS56P0CW18 603 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TRAM2Q15035 370 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 CHRDL2Q6WN34 429 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TRAM1L1Q8N609 369 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 CCDC107Q8WV48 283 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 FBXO9Q9UK97 447 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 GPR34Q9UPC5 381 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 A0A1B0GVI7 797 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 RTCAO00442 366 aaKnown RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ARL6IP5O75915 188 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 EPOP01588 193 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 LEPRP48357 1165 aaKnown RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 GINS1Q14691 196 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 USP53Q70EK8 1073 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 OR4N5Q8IXE1 308 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 LINC00471Q8N535 108 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 DTX3Q8N9I9 347 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 CNIH3Q8TBE1 160 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 PNPLA2Q96AD5 504 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 FUZQ9BT04 418 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 C1orf21Q9H246 121 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 GJD2Q9UKL4 321 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 PLCL2Q9UPR0 1127 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF382Q96SR6 550 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 FAM83CQ9BQN1 747 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 ATXN7L1Q9ULK2 861 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-209ENST00000438120 RNF6Q9Y252 685 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 IRS2Q9Y4H2 1338 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 OARD1Q9Y530 152 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 CKMT1AP12532 417 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 KCTD9Q7L273 389 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 NUP43Q8NFH3 380 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 OR51A7Q8NH64 312 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 GNPDA2Q8TDQ7 276 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 NSMAFQ92636 917 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 RBP7Q96R05 134 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 FBXL3Q9UKT7 428 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 KANTRA0A1W2PQU2 76 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 PMS2P3Q13401 168 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 PDSS2Q86YH6 399 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 ZDHHC14Q8IZN3 488 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 BORCS6Q96GS4 357 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 WDR92Q96MX6 357 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 ARHGAP9Q9BRR9 750 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 OR1A2Q9Y585 309 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 ACTL7AQ9Y615 435 aa16.52■□□□□ 0.24
PTPRF-209ENST00000438120 HSPA12AO43301 675 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 UGT8Q16880 541 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 TECRLQ5HYJ1 363 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 MSANTD1Q6ZTZ1 278 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 SLC22A16Q86VW1 577 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 ERI1Q8IV48 349 aaKnown RBP16.52■□□□□ 0.23
PTPRF-209ENST00000438120 TRIM43Q96BQ3 446 aaPredicted RBP16.52■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF778Q96MU6 729 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 TEPSINQ96N21 525 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF821O75541 412 aaPredicted RBP16.52■□□□□ 0.23
PTPRF-209ENST00000438120 S1PR4O95977 384 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 ADH7P40394 386 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 ADAM15Q13444 863 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 DSG2Q14126 1118 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 LIPJQ5W064 366 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 PYHIN1Q6K0P9 492 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 FAM180BQ6P0A1 224 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 POPDC3Q9HBV1 291 aa16.52■□□□□ 0.23
PTPRF-209ENST00000438120 METTL21EPA6NDL7 271 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 VNN2O95498 520 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 OSTF1Q92882 214 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 BRF2Q9HAW0 419 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 LTN1O94822 1766 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 SYCE2Q6PIF2 218 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 GALNT12Q8IXK2 581 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 DPH7Q9BTV6 452 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 HPF1Q9NWY4 346 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 SARDHQ9UL12 918 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 ATF6P18850 670 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 GRPRP30550 384 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 UNC50Q53HI1 259 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 C1orf189Q5VU69 101 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.51■□□□□ 0.232e-6■■■■□ 20.4
PTPRF-209ENST00000438120 ZNF283Q8N7M2 679 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 ZBTB8BQ8NAP8 495 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-209ENST00000438120 ZDHHC12Q96GR4 267 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 SPATA6Q9NWH7 488 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-209ENST00000438120 TEX13DA0A0J9YY54 714 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-209ENST00000438120 TRIM64A6NGJ6 449 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 CSTAP01040 98 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 DNAJB1P25685 340 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 NAA10P41227 235 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-209ENST00000438120 CDHR3Q6ZTQ4 885 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF761Q86XN6 746 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-209ENST00000438120 TREML1Q86YW5 311 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 OTUB2Q96DC9 234 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 TYROBPO43914 113 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 IFNA21P01568 189 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 JUNDP17535 347 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 DHCR24Q15392 516 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 TMEM236Q5W0B7 351 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF565Q8N9K5 539 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 NOP16Q9Y3C1 178 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms