RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 AGAP6Q5VW22 663 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CPZQ66K79 652 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TMEM220Q6QAJ8 160 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 SBSNQ6UWP8 590 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 MRPL10Q7Z7H8 261 aaKnown RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 IZUMO1Q8IYV9 350 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ADAMTS16Q8TE57 1224 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CYB5D2Q8WUJ1 264 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CCDC115Q96NT0 180 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 AGAP4Q96P64 663 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 BRINP2Q9C0B6 783 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 VNN3Q9NY84 501 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 A0A1W2PRU2 124 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 J3KTA2 159 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 RTCAO00442 366 aaKnown RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 IFNW1P05000 195 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 HNMTP50135 292 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CDKL4Q5MAI5 379 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 LIPKQ5VXJ0 399 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ATG9BQ674R7 924 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TMEM173Q86WV6 379 aaPredicted RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 PTRH1Q86Y79 214 aaKnown RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 LNX2Q8N448 690 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CAPNS2Q96L46 248 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 XKR8Q9H6D3 395 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 SLA2Q9H6Q3 261 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ACOT13Q9NPJ3 140 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 MRPL17Q9NRX2 175 aaKnown RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 SEC14L3Q9UDX4 400 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 PLAGL1Q9UM63 463 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TRBC2A0A5B9 178 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 SYN3O14994 580 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 POLR1CO15160 346 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 TXNL1O43396 289 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 BMP1P13497 986 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 PSMD8P48556 350 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 CCDC157Q569K6 752 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF691Q5VV52 312 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 RAET1GQ6H3X3 334 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 TCEANCQ8N8B7 351 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 GPR150Q8NGU9 434 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 DNASE1L2Q92874 299 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 C11orf24Q96F05 449 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 MBOAT4Q96T53 435 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 MGLLQ99685 303 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 MND1Q9BWT6 205 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 MROQ9BYG7 248 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 SEMA3GQ9NS98 782 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 KIAA1522Q9P206 1035 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 CDV3Q9UKY7 258 aaKnown RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 SPIN1Q9Y657 262 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 A0A1W2PQ45 241 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 A0A1W2PQY0 241 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 HOXA2O43364 376 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 TLX2O43763 284 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 CACNG3O60359 315 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 C1QCP02747 245 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 SLC10A3P09131 477 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 PIM1P11309 404 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 RAB3BP20337 219 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 ERP29P30040 261 aaKnown RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 TSC22D1Q15714 1073 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 CRTC2Q53ET0 693 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 GPR26Q8NDV2 337 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 RIOK2Q9BVS4 552 aaKnown RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 HEBP1Q9NRV9 189 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 SPG21Q9NZD8 308 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 B4GALT6Q9UBX8 382 aa11.46□□□□□ -0.57
HMGB1-206ENST00000405805 RUVBL1Q9Y265 456 aaKnown RBP11.46□□□□□ -0.57
HMGB1-206ENST00000405805 GLOD5A6NK44 160 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 CCNB2O95067 398 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 CDRT1O95170 752 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 LIPAP38571 399 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 CLDN8P56748 225 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 TAS2R50P59544 299 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 AP1S1P61966 158 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 PPIGQ13427 754 aaKnown RBP eCLIP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 MAD2L1BPQ15013 274 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 LEXMQ3ZCV2 418 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 IQCCQ4KMZ1 466 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 BICRALQ6AI39 1079 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 XAF1Q6GPH4 301 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF438Q7Z4V0 828 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 RTN4RL1Q86UN2 441 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 THOC6Q86W42 341 aaKnown RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 TBC1D19Q8N5T2 526 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 BTN2A2Q8WVV5 523 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 WBP2Q969T9 261 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 MUL1Q969V5 352 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 SLC22A12Q96S37 553 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 TBX5Q99593 518 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 C17orf62Q9BQA9 187 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 ERVMER34-1Q9H9K5 563 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 GPN2Q9H9Y4 310 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 NANSQ9NR45 359 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 MCUBQ9NWR8 336 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 GLTPQ9NZD2 209 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 HCN3Q9P1Z3 774 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 SRRDQ9UH36 339 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms