RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SUMF1Q8NBK3 374 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR5K2Q8NHB8 316 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF296Q8WUU4 475 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARL11Q969Q4 196 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZBED6CLQ96FA7 236 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SFXN2Q96NB2 322 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SNX18Q96RF0 628 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ACTL8Q9H568 366 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ADAP2Q9NPF8 381 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ETNK2Q9NVF9 386 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SIDT1Q9NXL6 827 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DNAJC27Q9NZQ0 273 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 BTRCQ9Y297 605 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MYOM2P54296 1465 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MYH3P11055 1940 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARPC4-TTLL3A0A0A6YYG9 625 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 FAM187AA6NFU0 413 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DISC1C4P0D8 188 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 NME6O75414 186 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 NFATC1O95644 943 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 RARGP13631 454 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 AKR1A1P14550 325 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 YBX3P16989 372 aaKnown RBP eCLIP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 BGNP21810 368 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DSC2Q02487 901 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SF3B4Q15427 424 aaKnown RBP eCLIP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DEFB115Q30KQ5 88 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PDLIM3Q53GG5 364 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PIGGQ5H8A4 983 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 RNF220Q5VTB9 566 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GPR155Q7Z3F1 870 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SFRP1Q8N474 314 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR10AD1Q8NGE0 317 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GDPD5Q8WTR4 605 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ANKRD7Q92527 254 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TGM7Q96PF1 710 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 LIN7BQ9HAP6 207 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 POT1Q9NUX5 634 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CNTN6Q9UQ52 1028 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PCDHB1Q9Y5F3 818 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 UHRF1BP1Q6BDS2 1440 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA2026Q5HYC2 2103 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MRC2Q9UBG0 1479 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 F5H6K3 240 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TLX2O43763 284 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SORBS2O94875 1100 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GTF2F2P13984 249 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PGCP20142 388 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DNAJB1P25685 340 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 RPL10P27635 214 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ICAM3P32942 547 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARL2P36404 184 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARRB1P49407 418 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 GLUD2P49448 558 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CLCN3P51790 818 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ROR2Q01974 943 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 HHEXQ03014 270 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 KLRC3Q07444 240 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TIGD2Q4W5G0 525 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 C22orf42Q6IC83 251 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 NAPRTQ6XQN6 538 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SLITRK4Q8IW52 837 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR4N2Q8NGD1 307 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SLC30A2Q9BRI3 323 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 BTBD2Q9BX70 525 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MAF1Q9H063 256 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 RNF19AQ9NV58 838 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR12D3Q9UGF7 316 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ARL2-SNX15V9GYD0 113 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SVILO95425 2214 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DOCK8Q8NF50 2099 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CLDN25C9JDP6 229 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 UGT1A9O60656 530 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF324O75467 553 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SULT1C4O75897 302 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 C8BP07358 591 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 UROSP10746 265 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CAMLGP49069 296 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SLC26A2P50443 739 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 DUSP3P51452 185 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF135P52742 658 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 MZT1Q08AG7 82 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CHIT1Q13231 466 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 BTBD16Q32M84 506 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TSTD2Q5T7W7 516 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CAPN13Q6MZZ7 669 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 FJX1Q86VR8 437 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SIRT2Q8IXJ6 389 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 CFAP52Q8N1V2 620 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 SIDT2Q8NBJ9 832 aaKnown RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PXYLP1Q8TE99 480 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 APOLD1Q96LR9 279 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 HYLS1Q96M11 299 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 OR4C12Q96R67 309 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 BPIFA3Q9BQP9 254 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 NAA11Q9BSU3 229 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-202ENST00000375405 TRMOQ9BU70 441 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ULBP2Q9BZM5 246 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 RNF38Q9H0F5 515 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 PGPEP1Q9NXJ5 209 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms