RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 STARD8Q92502 1023 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 TBC1D20Q96BZ9 403 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 C11orf24Q96F05 449 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-203ENST00000354098 CSF3RQ99062 836 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 LANCL2Q9NS86 450 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 GIMAP2Q9UG22 337 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 PADI2Q9Y2J8 665 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 CCDC88CQ9P219 2028 aa20.9■□□□□ 0.94
SHMT1-203ENST00000354098 CREG1O75629 220 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 RSL1D1O76021 490 aaKnown RBP20.89■□□□□ 0.94
SHMT1-203ENST00000354098 FHP07954 510 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 FOLR3P41439 243 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 HNRNPH2P55795 449 aaKnown RBP20.89■□□□□ 0.94
SHMT1-203ENST00000354098 GUCY1A3Q02108 690 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 ACSM2AQ08AH3 577 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 IL10RAQ13651 578 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 CCNYL2Q5T2Q4 361 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 ACSM2BQ68CK6 577 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 MRM1Q6IN84 353 aaKnown RBP20.89■□□□□ 0.94
SHMT1-203ENST00000354098 CYP20A1Q6UW02 462 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 FAM47BQ8NA70 645 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 TMEM52Q8NDY8 209 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 FAM76AQ8TAV0 307 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 SLC45A3Q96JT2 553 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 EFHD1Q9BUP0 239 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 LYRM4Q9HD34 91 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 C14orf105Q9NVL8 296 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 ADAM29Q9UKF5 820 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 NXT1Q9UKK6 140 aaKnown RBP20.89■□□□□ 0.94
SHMT1-203ENST00000354098 ATG4BQ9Y4P1 393 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 ASB4Q9Y574 426 aa20.89■□□□□ 0.94
SHMT1-203ENST00000354098 ACACBO00763 2458 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 B4GALT2O60909 372 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 SEC22BO75396 215 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 CD63P08962 238 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 FAM58BPP0C7Q3 252 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 HNRNPFP52597 415 aaKnown RBP20.89■□□□□ 0.93
SHMT1-203ENST00000354098 RAB38P57729 211 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 NR6A1Q15406 480 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 MINDY4Q4G0A6 757 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 SPIN4Q56A73 249 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 MFSD4BQ5TF39 518 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 RIPOR1Q6ZS17 1223 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 FAM47EQ6ZV65 393 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 PAGE2Q7Z2X7 111 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 C19orf60Q96EN9 201 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 C7orf26Q96N11 449 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 OR1F2PQ96R84 312 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 MESP1Q9BRJ9 268 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 NUF2Q9BZD4 464 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 FAM117AQ9C073 453 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 MKL2Q9ULH7 1088 aa20.89■□□□□ 0.93
SHMT1-203ENST00000354098 CYR61O00622 381 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 LSM1O15116 133 aaKnown RBP20.88■□□□□ 0.93
SHMT1-203ENST00000354098 NKX2-8O15522 239 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 PRPH2P23942 346 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 KIAA0040Q15053 153 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 GALNTL6Q49A17 601 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 ATP1A1-AS1Q5TC04 95 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 GPR180Q86V85 440 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 HOMEZQ8IX15 550 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 EFCAB3Q8N7B9 438 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 CRB3Q9BUF7 120 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 EBPLQ9BY08 206 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 LRTM1Q9HBL6 345 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 C3orf18Q9UK00 162 aa20.88■□□□□ 0.93
SHMT1-203ENST00000354098 CFAP47Q6ZTR5 3102 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 ARHGAP10A1A4S6 786 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 IDSB3KWA1 339 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 NPIPB8E9PQR5 432 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 PSMD12O00232 456 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 PRKRAO75569 313 aaKnown RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 RECKO95980 971 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 FURINP09958 794 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 IL10P22301 178 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 BTG2P78543 158 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 RFTN2Q52LD8 501 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 C18orf63Q68DL7 685 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 CCDC81Q6ZN84 652 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 RGS9BPQ6ZS82 235 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 CRLF3Q8IUI8 442 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 WDR75Q8IWA0 830 aaKnown RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 PIWIL2Q8TC59 973 aaKnown RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 VN1R1Q9GZP7 353 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 CPNE5Q9HCH3 593 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 C1orf109Q9NX04 203 aa20.87■□□□□ 0.93
SHMT1-203ENST00000354098 TEX10Q9NXF1 929 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 POLR3HQ9Y535 204 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 ANKRD11Q6UB99 2663 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-203ENST00000354098 A0A1W2PR48 441 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 PROM1O43490 865 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 PCDH7O60245 1069 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 PEX11AO75192 247 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 HEXBP07686 556 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 CPN2P22792 545 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 MAPK12P53778 367 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 BROXQ5VW32 411 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 FAAH2Q6GMR7 532 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 GALNT18Q6P9A2 607 aa20.86■□□□□ 0.93
SHMT1-203ENST00000354098 KIRREL3Q8IZU9 778 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms