RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 C19orf60Q96EN9 201 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 CATSPER2Q96P56 530 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 HBEGFQ99075 208 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 CRB3Q9BUF7 120 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 ZNF717Q9BY31 904 aaPredicted RBP16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 MRPL1Q9BYD6 325 aaKnown RBP16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 WDR41Q9HAD4 459 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 C1orf109Q9NX04 203 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 C19orf25Q9UFG5 118 aaPredicted RBP16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 FIS1Q9Y3D6 152 aa16.9■□□□□ 0.3
SSSCA1-201ENST00000309328 A0A0G2JN53 185 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 TAF4O00268 1085 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 RTCAO00442 366 aaKnown RBP16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 SH3BGRLO75368 114 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 LYPLA1O75608 230 aaPredicted RBP16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 HEXBP07686 556 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 FAM58BPP0C7Q3 252 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 MMP11P24347 488 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 MAPK1P28482 360 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 SERPINB3P29508 390 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 MAPK12P53778 367 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 HSD17B7P56937 341 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 MAT1AQ00266 395 aaKnown RBP16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 HMGCS1Q01581 520 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 KLC1Q07866 573 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 MAD2L1Q13257 205 aaPredicted RBP16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 NR6A1Q15406 480 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 XKR7Q5GH72 579 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 CCNYL2Q5T2Q4 361 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 CES4AQ5XG92 561 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 QSOX2Q6ZRP7 698 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 DTWD1Q8N5C7 304 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 OR5T3Q8NGG3 340 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 PIWIL2Q8TC59 973 aaKnown RBP16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 AGR3Q8TD06 166 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 SNRNP27Q8WVK2 155 aaKnown RBP16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 RNF31Q96EP0 1072 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 PEX11GQ96HA9 241 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 IL17BQ9UHF5 180 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 C3orf18Q9UK00 162 aa16.89■□□□□ 0.29
SSSCA1-201ENST00000309328 URB1O60287 2271 aaKnown RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 IDSB3KWA1 339 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 TMEM233B4DJY2 109 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 PIP5K1BO14986 540 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 HDAC3O15379 428 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 KLK1P06870 262 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 F8A1P23610 371 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 TIA1P31483 386 aaKnown RBP eCLIP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 EMP2P54851 167 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 RUNX2Q13950 521 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 MINDY4Q4G0A6 757 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 ATP6AP1LQ52LC2 224 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 VWA2Q5GFL6 755 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 MRM1Q6IN84 353 aaKnown RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 C1orf52Q8N6N3 182 aaKnown RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 PLPP5Q8NEB5 264 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 TANKQ92844 425 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 C11orf24Q96F05 449 aaPredicted RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 FAIM2Q9BWQ8 316 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 C20orf27Q9GZN8 174 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 SOX17Q9H6I2 414 aaPredicted RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 LRTM1Q9HBL6 345 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 KCMF1Q9P0J7 381 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 MKL2Q9ULH7 1088 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 ZMIZ1Q9ULJ6 1067 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 CCL27Q9Y4X3 112 aa16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 TPRP12270 2363 aaKnown RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 ANKRD11Q6UB99 2663 aaPredicted RBP16.88■□□□□ 0.29
SSSCA1-201ENST00000309328 GNG14A0A1W2PPG7 69 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 K7ENP7 123 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 PEX12O00623 359 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 EFSO43281 561 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 PCDH7O60245 1069 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 PRMT3O60678 531 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 CNOT3O75175 753 aaKnown RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 SEC22BO75396 215 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 EEDO75530 441 aaKnown RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 TGDSO95455 350 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 LINC00032P0C843 101 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 DDX5P17844 614 aaKnown RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 CPN2P22792 545 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 TPP2P29144 1249 aaPredicted RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 SNRPNP63162 240 aaKnown RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 OLR1P78380 273 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 TNFRSF17Q02223 184 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 VAC14Q08AM6 782 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 SYT16Q17RD7 645 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 MFSD4BQ5TF39 518 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 INO80CQ6PI98 192 aaPredicted RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 WDR75Q8IWA0 830 aaKnown RBP16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 FAM9CQ8IZT9 166 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 EFCAB3Q8N7B9 438 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 VN1R1Q9GZP7 353 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 TUBB1Q9H4B7 451 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 LANCL2Q9NS86 450 aa16.87■□□□□ 0.29
SSSCA1-201ENST00000309328 A0A1W2PQ72 361 aa16.86■□□□□ 0.29
SSSCA1-201ENST00000309328 CYR61O00622 381 aa16.86■□□□□ 0.29
SSSCA1-201ENST00000309328 LSM1O15116 133 aaKnown RBP16.86■□□□□ 0.29
SSSCA1-201ENST00000309328 PROM1O43490 865 aa16.86■□□□□ 0.29
SSSCA1-201ENST00000309328 ALOX12BO75342 701 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms