RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PAIP2BQ9ULR5 123 aaKnown RBP12.21□□□□□ -0.45
LINC00540-203ENST00000631321 ICKQ9UPZ9 632 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 HCN4Q9Y3Q4 1203 aa12.21□□□□□ -0.45
LINC00540-203ENST00000631321 PRAMEF33A0A0G2JMD5 474 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 SPINT1O43278 529 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 PRAMEF10O60809 474 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 RECKO95980 971 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 GBAP04062 536 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 RPLP0P05388 317 aaKnown RBP12.21□□□□□ -0.46
LINC00540-203ENST00000631321 RB1P06400 928 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ADORA3P0DMS8 318 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 IDH2P48735 452 aaKnown RBP12.21□□□□□ -0.46
LINC00540-203ENST00000631321 CASP9P55211 416 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 CDC20Q12834 499 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 INAVAQ3KP66 663 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ARHGAP15Q53QZ3 475 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF765Q7L2R6 523 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 CFAP206Q8IYR0 622 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 OR9Q2Q8NGE9 314 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 PSMA8Q8TAA3 256 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 UBE2E3Q969T4 207 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 MAPKAP1Q9BPZ7 522 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 WRAP53Q9BUR4 548 aaKnown RBP12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ZCCHC2Q9C0B9 1178 aaKnown RBP12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF556Q9HAH1 456 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 GPR83Q9NYM4 423 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 KCND3Q9UK17 655 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ANGPT4Q9Y264 503 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 ITM2BQ9Y287 266 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 UGT2A1Q9Y4X1 527 aa12.21□□□□□ -0.46
LINC00540-203ENST00000631321 A0A1W2PRB8 838 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 AGAP5A6NIR3 686 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SAGE2PA6NJ88 616 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 UPK1BO75841 260 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 STSP08842 583 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 RHCEP18577 417 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 TPP2P29144 1249 aaPredicted RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 CHI3L1P36222 383 aaPredicted RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 POM121L1PQ3SYA9 428 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 C9orf43Q8TAL5 461 aaPredicted RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SETD7Q8WTS6 366 aaKnown RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 CDCA4Q9BXL8 241 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SPNS1Q9H2V7 528 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 PRM3Q9NNZ6 103 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 AMBNQ9NP70 447 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 TMEM39AQ9NV64 488 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SCHIP1Q9P0W5 487 aaPredicted RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 FTSJ1Q9UET6 329 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 MAP4K5Q9Y4K4 846 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 C17orf113A0A1B0GUU1 675 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SH3D21A4FU49 640 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 ZAR1LA6NP61 321 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 J3KTA2 159 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SAP18O00422 153 aaKnown RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 PCDH17O14917 1159 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 DSCR3O14972 297 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 AQP9O43315 295 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 EFCAB14O75071 495 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 CCNB2O95067 398 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 PTHP01270 115 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 KLK1P06870 262 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 CISD3P0C7P0 127 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 UQCRC2P22695 453 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 ACADLP28330 430 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 GRK5P34947 590 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 FPGSQ05932 587 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 STARD3Q14849 445 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 C19orf48Q6RUI8 117 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF367Q7RTV3 350 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 VN1R5Q7Z5H4 357 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 STX19Q8N4C7 294 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 AMER2Q8N7J2 671 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 KBTBD8Q8NFY9 601 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 APOBEC4Q8WW27 367 aaKnown RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 FAM129BQ96TA1 746 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 DPEP2Q9H4A9 486 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 SP140LQ9H930 580 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 TRIM39Q9HCM9 518 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 CNOT2Q9NZN8 540 aaKnown RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 KLK4Q9Y5K2 254 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 CFAP20Q9Y6A4 193 aaKnown RBP12.2□□□□□ -0.46
LINC00540-203ENST00000631321 WNT6Q9Y6F9 365 aa12.2□□□□□ -0.46
LINC00540-203ENST00000631321 EFCAB10A6NFE3 127 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 ZBBXA8MT70 800 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PLK4O00444 970 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PAPLNO95428 1278 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 MYCP01106 439 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 IL3P08700 152 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 MAGEA8P43361 318 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 RGS6P49758 472 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 NUDT6P53370 316 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 OLR1P78380 273 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 ST3GAL4Q11206 333 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 DNASE1L3Q13609 305 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF181Q2M3W8 571 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF770Q6IQ21 691 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 OR5AK3PQ8NH89 298 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 UTP15Q8TED0 518 aaKnown RBP12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PDXPQ96GD0 296 aa12.19□□□□□ -0.46
LINC00540-203ENST00000631321 PPP1R16AQ96I34 528 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms