RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CCR8P51685 355 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 RRADP55042 308 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 REEP5Q00765 189 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 HMGCS1Q01581 520 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 PRDX1Q06830 199 aaKnown RBP12.04□□□□□ -0.48
UPF1-208ENST00000600012 IFT88Q13099 833 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 KIR2DS3Q14952 304 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 NR6A1Q15406 480 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 PAGE2BQ5JRK9 111 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 PRAMEF17Q5VTA0 474 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 FRG2Q64ET8 278 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 LCN10Q6JVE6 187 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 JMJD6Q6NYC1 403 aaPredicted RBP12.04□□□□□ -0.48
UPF1-208ENST00000600012 MED27Q6P2C8 311 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 FAM198BQ6UWH4 519 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 Q6ZSR9 355 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 MTDHQ86UE4 582 aaKnown RBP12.04□□□□□ -0.48
UPF1-208ENST00000600012 FDCSPQ8NFU4 85 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 ABHD11Q8NFV4 315 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 OR1L3Q8NH93 324 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 WDR20Q8TBZ3 569 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 ACTRT2Q8TDY3 377 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 STON2Q8WXE9 905 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 TUBGCP3Q96CW5 907 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 PRAP1Q96NZ9 151 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 FRG2BQ96QU4 278 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 OR2A14Q96R47 310 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 DPH2Q9BQC3 489 aaPredicted RBP12.04□□□□□ -0.48
UPF1-208ENST00000600012 ACPTQ9BZG2 426 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 NMUR2Q9GZQ4 415 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 MYLK2Q9H1R3 596 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 AKTIPQ9H8T0 292 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 PRM3Q9NNZ6 103 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 SLAMF7Q9NQ25 335 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 GPR83Q9NYM4 423 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 CCDC88CQ9P219 2028 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 NBPF19A0A087WUL8 3843 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 FEZF1A0PJY2 475 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 C9J4A7 227 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 H0YIV9 168 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 PEX11AO75192 247 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 SEMA7AO75326 666 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 ULK1O75385 1050 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 NCF2P19878 526 aaPredicted RBP12.03□□□□□ -0.48
UPF1-208ENST00000600012 CSNK1G2P78368 415 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 ABATP80404 500 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 LAPTM5Q13571 262 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 NCF4Q15080 339 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 RBBP5Q15291 538 aaKnown RBP12.03□□□□□ -0.48
UPF1-208ENST00000600012 HIST2H2ACQ16777 129 aaPredicted RBP12.03□□□□□ -0.48
UPF1-208ENST00000600012 IMPG1Q17R60 797 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 GALNTL6Q49A17 601 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 SLC6A19Q695T7 634 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 HIST2H2BCQ6DN03 193 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 HIST2H2AA3Q6FI13 130 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 RNF165Q6ZSG1 346 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 LARP4Q71RC2 724 aaKnown RBP eCLIP12.03□□□□□ -0.48
UPF1-208ENST00000600012 TRPM8Q7Z2W7 1104 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 RAB43Q86YS6 212 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 PLD3Q8IV08 490 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 FITM2Q8N6M3 262 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 Q8NA96 180 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 OR7G3Q8NG95 312 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 CEP70Q8NHQ1 597 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 PNPLA2Q96AD5 504 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 SLC22A18Q96BI1 424 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 ERP27Q96DN0 273 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 MTERF1Q99551 399 aaKnown RBP12.03□□□□□ -0.48
UPF1-208ENST00000600012 AIF1LQ9BQI0 150 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 DPH7Q9BTV6 452 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 NUDT9Q9BW91 350 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 SLC7A5P2Q9GIP4 190 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 RIC8BQ9NVN3 520 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 ARMCX1Q9P291 453 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 ZFP69BQ9UJL9 534 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 SERTAD3Q9UJW9 196 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 PADI2Q9Y2J8 665 aa12.03□□□□□ -0.48
UPF1-208ENST00000600012 UTP20O75691 2785 aaKnown RBP12.03□□□□□ -0.48
UPF1-208ENST00000600012 C2orf74A8MZ97 194 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 SLC28A1O00337 649 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 EBAG9O00559 213 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 HAT1O14929 419 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 RGS14O43566 566 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 SH3BGRLO75368 114 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 DDAH2O95865 285 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 HBQ1P09105 142 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 ALDOCP09972 364 aaKnown RBP12.02□□□□□ -0.49
UPF1-208ENST00000600012 PRR35P0CG20 571 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 PVRP15151 417 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 ST6GAL1P15907 406 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 LBPP18428 481 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 ITGA1P56199 1179 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 CSTF3Q12996 717 aaKnown RBP12.02□□□□□ -0.49
UPF1-208ENST00000600012 ATP1A4Q13733 1029 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 ZSCAN26Q16670 478 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 PRR30Q53SZ7 412 aaPredicted RBP12.02□□□□□ -0.49
UPF1-208ENST00000600012 SPESP1Q6UW49 350 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 C6orf89Q6UWU4 347 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 TRIM46Q7Z4K8 759 aa12.02□□□□□ -0.49
UPF1-208ENST00000600012 VN1R5Q7Z5H4 357 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms